iRNA Compositions and Methods for Silencing MYLIP
AssigneeAlnylam Pharmaceuticals, Inc.
InventorsLUCAS WARD, AIMEE DEATON, JEFFREY ZUBER, MARK K. SCHLEGEL, ADAM CASTORENO
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Abstract
The invention relates to double-stranded ribonucleic acid (dsRNA) compositions targeting the myosin regulatory light chain interacting protein (MYLIP) gene, as well as methods of inhibiting expression of MYLIP, and methods of treating subjects that would benefit from reduction in expression of MYLIP, such as subjects having a MYLIP-associated disease, disorder, or condition, using such dsRNA compositions.
Claims127
A double stranded ribonucleic acid (dsRNA) agent for inhibiting expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand and an antisense strand, wherein the sense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:
- 1, and the antisense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:
- 2.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein said dsRNA agent comprises a sense strand and an antisense strand forming a double stranded region, wherein said antisense strand comprises a region of complementarity to an mRNA encoding MYLIP which comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from any one of the antisense sequences listed in Table 3 or 4.
A double stranded RNA (dsRNA) agent for inhibiting expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the double stranded RNA agent comprises a sense strand and an antisense strand forming a double stranded region,
- wherein the sense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:
- 1, and the antisense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:
- 2,
- wherein substantially all of the nucleotides of the sense strand and substantially all of the nucleotides of the antisense strand are modified nucleotides, and
- wherein the sense strand is conjugated to a ligand attached at the 3′-terminus.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein said dsRNA agent comprises a sense strand complementary to an antisense strand, wherein said antisense strand comprises a region complementary to part of an mRNA encoding MYLIP, wherein each strand is about 14 to about 30 nucleotides in length, wherein said dsRNA agent is represented by formula (Ii):
- (Ii)
- sense:
- 5′ np-Na-(X X X)i-Nb-Y Y Y-Nb-(Z Z Z)j-Na-nq 3′
- antisense:
- 3′ np′-Na′-(X′X′X′)k-Nb′-Y′Y′Y′-Nb′-(Z′Z′Z′)l-
- Na′-nq′ 5′
- wherein:
- i, j, k, and 1 are each independently 0 or 1;
- p, p′, q, and q′ are each independently 0-6;
- each Na and Na′ independently represents an oligonucleotide sequence comprising 0-25 nucleotides which are either modified or unmodified or combinations thereof, each sequence comprising at least two differently modified nucleotides;
- each Nb and Nb′ independently represents an oligonucleotide sequence comprising 0-10 nucleotides which are either modified or unmodified or combinations thereof;
- each np, np′, nq, and nq′, each of which may or may not be present, independently represents an overhang nucleotide;
- XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of three identical modifications on three consecutive nucleotides;
- modifications on Nb differ from the modification on Y and modifications on Nb′ differ from the modification on Y′;
- and
- wherein the sense strand is conjugated to at least one ligand.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand complementary to an antisense strand, wherein the antisense strand comprises a region complementary to part of an mRNA encoding MYLIP, wherein each strand is about 14 to about 30 nucleotides in length, wherein the dsRNA agent is represented by formula (Ii):
- (Ii)
- sense:
- 5′ np-Na-(X X X)i-Nb-Y Y Y-Nb-(Z Z Z)j-Na-nq 3′
- antisense:
- 3′ np′-Na′-(X′X′X′)k-Nb′-Y′Y′Y′-Nb′-(Z′Z′Z′)l-
- Na′-nq′ 5′
- wherein:
- i, j, k, and 1 are each independently 0 or 1;
- p, p′, q, and q′ are each independently 0-6;
- each Na and Na′ independently represents an oligonucleotide sequence comprising 0-25 nucleotides which are either modified or unmodified or combinations thereof, each sequence comprising at least two differently modified nucleotides;
- each Nb and Nb′ independently represents an oligonucleotide sequence comprising 0-10 nucleotides which are either modified or unmodified or combinations thereof;
- each np, np′, nq, and nq′, each of which may or may not be present independently represents an overhang nucleotide;
- XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of three identical modifications on three consecutive nucleotides, and wherein the modifications are 2′-O-methyl or 2′-fluoro modifications;
- modifications on Nb differ from the modification on Y and modifications on Nb′ differ from the modification on Y′;
- and
- wherein the sense strand is conjugated to at least one ligand.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand complementary to an antisense strand, wherein the antisense strand comprises a region complementary to part of an mRNA encoding MYLIP, wherein each strand is about 14 to about 30 nucleotides in length, wherein the dsRNA agent is represented by formula (Ii):
- (Ii)
- sense:
- 5′ np-Na-(X X X)i-Nb-Y Y Y-Nb-(Z Z Z)j-Na-nq 3′
- antisense:
- 3′ np′-Na′-(X′X′X′)k-Nb′-Y′Y′Y′-Nb′-(Z′Z′Z′)l-
- Na′-nq′ 5′
- wherein:
- i, j, k, and 1 are each independently 0 or 1;
- each np, nq, and nq′, each of which may or may not be present, independently represents an overhang nucleotide;
- p, q, and q′ are each independently 0-6;
- np′>0 and at least one np′ is linked to a neighboring nucleotide via a phosphorothioate linkage;
- each Na and Na′ independently represents an oligonucleotide sequence comprising 0-25 nucleotides which are either modified or unmodified or combinations thereof, each sequence comprising at least two differently modified nucleotides;
- each Nb and Nb′ independently represents an oligonucleotide sequence comprising 0-10 nucleotides which are either modified or unmodified or combinations thereof;
- XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of three identical modifications on three consecutive nucleotides, and wherein the modifications are 2′-O-methyl or 2′-fluoro modifications;
- modifications on Nb differ from the modification on Y and modifications on Nb′ differ from the modification on Y′;
- and
- wherein the sense strand is conjugated to at least one ligand.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand complementary to an antisense strand, wherein the antisense strand comprises a region complementary to part of an mRNA encoding MYLIP, wherein each strand is about 14 to about 30 nucleotides in length, wherein the dsRNA agent is represented by formula (Ii):
- (Ii)
- sense:
- 5′ np-Na-(X X X)i-Nb-Y Y Y-Nb-(Z Z Z)j-Na-nq 3′
- antisense:
- 3′ np′-Na′-(X′X′X′)k-Nb′-Y′Y′Y′-Nb′-(Z′Z′Z′)l-
- Na′-nq′ 5′
- wherein:
- i, j, k, and 1 are each independently 0 or 1;
- each np, nq, and nq′, each of which may or may not be present, independently represents an overhang nucleotide;
- p, q, and q′ are each independently 0-6;
- np′>0 and at least one np′ is linked to a neighboring nucleotide via a phosphorothioate linkage;
- each Na and Na′ independently represents an oligonucleotide sequence comprising 0-25 nucleotides which are either modified or unmodified or combinations thereof, each sequence comprising at least two differently modified nucleotides;
- each Nb and Nb′ independently represents an oligonucleotide sequence comprising 0-10 nucleotides which are either modified or unmodified or combinations thereof;
- XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of three identical modifications on three consecutive nucleotides, and wherein the modifications are 2′-O-methyl or 2′-fluoro modifications;
- modifications on Nb differ from the modification on Y and modifications on Nb′ differ from the modification on Y′;
- and
- wherein the sense strand is conjugated to at least one ligand, wherein the ligand is one or more GalNAc derivatives attached through a monovalent, bivalent, or trivalent branched linker.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand complementary to an antisense strand, wherein the antisense strand comprises a region complementary to part of an mRNA encoding MYLIP, wherein each strand is about 14 to about 30 nucleotides in length, wherein the dsRNA agent is represented by formula (Ii):
- (Ii)
- sense:
- 5′ np-Na-(X X X)i-Nb-Y Y Y-Nb-(Z Z Z)j-Na-nq 3′
- antisense:
- 3′ np′-Na′-(X′X′X′)k-Nb′-Y′Y′Y′-Nb′-(Z′Z′Z′)l-
- Na′-nq′ 5′
- wherein:
- i, j, k, and 1 are each independently 0 or 1;
- each np, nq, and nq′, each of which may or may not be present, independently represents an overhang nucleotide;
- p, q, and q′ are each independently 0-6;
- np′>0 and at least one np′ is linked to a neighboring nucleotide via a phosphorothioate linkage;
- each Na and Na′ independently represents an oligonucleotide sequence comprising 0-25 nucleotides which are either modified or unmodified or combinations thereof, each sequence comprising at least two differently modified nucleotides;
- each Nb and Nb′ independently represents an oligonucleotide sequence comprising 0-10 nucleotides which are either modified or unmodified or combinations thereof;
- XXX, YYY, ZZZ, X′X′X′, Y′Y′Y′, and Z′Z′Z′ each independently represent one motif of three identical modifications on three consecutive nucleotides, and wherein the modifications are 2′-O-methyl or 2′-fluoro modifications;
- modifications on Nb differ from the modification on Y and modifications on Nb′ differ from the modification on Y′;
- wherein the sense strand comprises at least one phosphorothioate linkage;
- and
- wherein the sense strand is conjugated to at least one ligand, wherein the ligand is one or more GalNAc derivatives attached through a monovalent, bivalent, or trivalent branched linker.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand complementary to an antisense strand, wherein the antisense strand comprises a region complementary to part of an mRNA encoding MYLIP, wherein each strand is about 14 to about 30 nucleotides in length, wherein the dsRNA agent is represented by formula (Ij):
- sense:
- (Ij)
- 5′ np-Na-Y Y Y-Na-nq 3′
- antisense:
- 3′ np′-Na′-Y′Y′Y′-Na′-nq′ 5′
- wherein:
- each np, nq, and nq′, each of which may or may not be present, independently represents an overhang nucleotide;
- p, q, and q′ are each independently 0-6;
- np′>0 and at least one np′ is linked to a neighboring nucleotide via a phosphorothioate linkage;
- each Na and Na′ independently represents an oligonucleotide sequence comprising 0-25 nucleotides which are either modified or unmodified or combinations thereof, each sequence comprising at least two differently modified nucleotides;
- YYY and Y′Y′Y′ each independently represent one motif of three identical modifications on three consecutive nucleotides, and wherein the modifications are 2′-O-methyl or 2′-fluoro modifications;
- wherein the sense strand comprises at least one phosphorothioate linkage;
- and
- wherein the sense strand is conjugated to at least one ligand, wherein the ligand is one or more GalNAc derivatives attached through a monovalent, bivalent, or trivalent branched linker.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting the expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand and an antisense strand forming a double stranded region,
- wherein the sense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:
- 1, and the antisense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:
- 2,
- wherein substantially all of the nucleotides of the sense strand comprise a modification selected from the group consisting of a 2′-O-methyl modification and a 2′-fluoro modification,
- wherein the sense strand comprises two phosphorothioate internucleotide linkages at the 5′-terminus,
- wherein substantially all of the nucleotides of the antisense strand comprise a modification selected from the group consisting of a 2′-O-methyl modification and a 2′-fluoro modification,
- wherein the antisense strand comprises two phosphorothioate internucleotide linkages at the 5′-terminus and two phosphorothioate internucleotide linkages at the 3′-terminus, and
- wherein the sense strand is conjugated to one or more GalNAc derivatives attached through a monovalent, bivalent or trivalent branched linker at the 3′-terminus.
A double stranded ribonucleic acid (dsRNA) agent for inhibiting expression of myosin regulatory light chain interacting protein (MYLIP) in a cell, wherein the dsRNA agent comprises a sense strand and an antisense strand forming a double stranded region, wherein the sense strand comprises a nucleotide sequence of any one of the agents in Table 3 or 4 and the antisense strand comprises a nucleotide sequence of any one of the agents in Table 3 or 4,
- wherein substantially all of the nucleotides of the sense strand and substantially all of the nucleotides of the antisense strand are modified nucleotides, and
- wherein the dsRNA agent is conjugated to a ligand.
A dsRNA agent that targets a hotspot region of a myosin regulatory light chain interacting protein (MYLIP) mRNA.
The method of claim 125, wherein the additional therapeutic comprises a statin.
Dependencies are inferred from the claim text.