Compositions comprising kozak sequences selected for enhanced expression
AssigneeAavantiBio, Inc.
InventorWidler Casy
Life of this patent
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Abstract
Several embodiments of the present disclosure related to selection of Kozak sequences that result in enhanced expression of a transgene of interest. Some embodiments relate to a Kozak sequence that is non-native to either the gene to be expressed and/or to a promoter driving expression of the gene. Some embodiments relate to synthetic Kozak sequences designed to yield enhanced expression of the gene in a tissue of interest, such as cardiac tissue.
Claims34
A nucleic acid comprising an expression construct comprising a transgene coding sequence, a promoter, and a consensus Kozak sequence, wherein the expression construct is flanked on each side by an inverted terminal repeat sequence, wherein the synthetic Kozak sequence has at least 88% sequence identity to the sequence of AGCCCCAAC.
A method of inducing increased expression of a human transgene in a target cell, comprising:
- contacting a target cell with a plurality of rAAV particles comprising a nucleic acid expression construct comprising:
- a human transgene coding sequence;
- a Kozak sequence;
- and
- an enhancer element operably linked to a promoter,
- wherein the Kozak sequence is non-native to one or more of the transgene, the enhancer element and/or the promoter,
- wherein the expression construct is flanked on each side by an inverted terminal repeat sequence, and
- wherein said contacting results in the target cell increasing expression of human transgene as compared to prior to the contacting, thereby increasing the expression of a human transgene.
A method of generating a consensus Kozak sequence, the method comprising:
- assembling a collection of multiple native Kozak sequences associated with genes of interest,
- for each nucleotide position of at least a first native Kozak sequence, comparing a first identity of a first nucleotide within the at least a first native Kozak sequence to a first identity of a first nucleotide within a second native Kozak sequence, wherein the first nucleotide in the at least a first native Kozak sequence and the first nucleotide of the second Kozak sequence occupy the same position relative to the length of the at least a first and the second native Kozak sequence,
- identifying a predominant nucleotide at each position, wherein identifying comprises one or more of:
- nucleotide identity, purine identity, or pyrimidine identity, and assembling a consensus sequence comprising the predominant nucleotide for each position.
A method of generating a consensus Kozak sequence, the method comprising:
- assembling a collection of multiple native Kozak sequences associated with genes of interest, and
- utilizing a computer-implemented method to generate the consensus Kozak sequence.
Dependencies are inferred from the claim text.