Ku inhibitors and their use
AssigneeIndiana University Research and Technology Corporation
InventorsJohn J. TURCHI, Navnath GAVANDE, Pamela S. VANDERVERE-CAROZZA
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Abstract
The present disclosure relates to certain compounds having binding affinity for Ku, and uses thereof. Specifically, the present disclosure relates to the use of Ku inhibitors as described herein in site-specific genome engineering technologies, including but not limited to CRISPR/Cas9, Zinc finger nuclease (ZFN), Transcription activator-like effector nuclease (TALEN), and meganuclease. The present disclosure also relates to kits useful for site-specific genome engineering that include at least one compound as described herein.
Claims21
-31. (canceled)
A method of gene editing comprising
- a. contacting a compound of the formula II
- wherein
- Z is O or S;
- R1 and R2 are independently selected from the group consisting of H, halogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, 3- to 7-membered heterocycloalkyl, 5- to 7-membered heteroaryl, —OR6, —CN, —NO2, —C(O)R6, —CO2R6, —C(O)NR6R7, —OS(O)R6, —OS(O)2R6, —SR6, —S(O)R6, —S(O)2R6, —S(O)NR6R7, —S(O)2NR6R7, —OS(O)NR6R7, —OS(O)2NR6R7, and —NR6R7;
- wherein each hydrogen atom in C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl or C3-C6 cycloalkyl is independently optionally substituted with halogen;
- R3 is H, halogen, or C1-C6 alkyl, wherein each hydrogen atom in C1-C6 alkyl is independently optionally substituted with halogen;
- Y is —C(O)NR4R5 or phenyl, wherein each hydrogen atom in phenyl is optionally substituted with halogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, 3- to 7-membered heterocycloalkyl, 5- to 7-membered heteroaryl, —OR4, —CN, —NO2, —C(O)R4, —CO2R4, —C(O)NR4R5, —OS(O)R4, —OS(O)2R4, —SR4, —S(O)R4, —S(O)2R4, —S(O)NR4R5, —S(O)2NR4R5, —OS(O)NR4R5, —OS(O)2NR4R5, and —NR4R5, or two adjacent hydrogen atoms on phenyl are optionally substituted with a group that combines with the carbon atoms to which they are attached to form a 5- to 7-membered heterocycloalkyl ring;
- R4 and R5 are each independently selected from the group consisting of H, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, —C1-C6 alkyl-(C3-C6 cycloalkyl), —C1-C6 alkyl-(C6-C10 aryl), 3- to 7-membered heterocycloalkyl, C6-C10 aryl and 5- to 7-membered heteroaryl, wherein each hydrogen atom in C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, —C1-C6 alkyl-(C3-C6 cycloalkyl) or —C1-C6 alkyl-(C6-C10 aryl) is independently optionally substituted with halogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, 3- to 7-membered heterocycloalkyl, 5- to 7-membered heteroaryl, —OR8, —CN, —NO2, —C(O)R8, —CO2R8, —C(O)NR8R9, —OS(O)R8, —OS(O)2R8, —SR8, —S(O)R8, —S(O)2R8, —S(O)NR8R9, —S(O)2NR8R9, —OS(O)NR8R9, —OS(O)2NR8R9, and —NR8R9;
- each R6, R7, R8 and R9 is independently selected from the group consisting of H, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, —C1-C6 alkyl-(C3-C6 cycloalkyl), —C1-C6 alkyl-(C6-C10 aryl), 3- to 7-membered heterocycloalkyl and C6-C10 aryl;
- C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, —C1-C6 alkyl-(C3-C6 cycloalkyl) or —C1-C6 alkyl-(C6-C10 aryl) is independently optionally substituted with halogen, and
- is either a single bond or a pi-bond, with at least one cell comprising at least one programmable nuclease.
Dependencies are inferred from the claim text.