Methods and compositions
AssigneeUnited Kingdom Research and Innovation
InventorsJason CHIN, Nicolas HUGUENIN-DEZOT, Mohan MAHESH, Shan TANG, Duy P. NGUYEN
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Abstract
The invention relates to genetic incorporation of 2,3-diamino propionic acid (DAP) into polypeptides, to unnatural amino acids comprising DAP, to a tRNA synthetase for charging tRNA with unnatural amino acids comprising DAP, and to methods of using the resulting polypeptides, for example in capturing substrates and/or intermediates in enzymatic reactions. The invention also relates to compounds of formula (I) or (II): or salts, solvates, tautomers, isomers or mixtures thereof.
Claims32
An unnatural amino acid of formula (I) or (H1):
- or salts, solvates, tautomers, isomers or mixtures thereof:
- wherein:
- R1 is H, an amino acid residue or a peptide;
- R2 is H, C1-6 alkyl, C1-6 haloalkyl or C5-20 aryl.
- q is 1, 2 or 3;
- each R3 or R4 is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl, C5-20, aryl, C3-20 heteroaryl, OC1-6 alkyl, SC1-6 alkyl, NH(C1-6 alkyl) and N(C1-6 alkyl)2;
- X is X1—Y, S—S—R5, Se—Se—R5, O—NH—R5, S—NH—R5, Se—NH—R5, X2—Y1, X3—Y2, N3 or NH—S(O)2—Y3;
- X1 is S, Se, O, NH or N(C1-6 alkyl);
- X2 is S, Se or O;
- X3 is NH—C(O)—O;
- X4 is N H—C(O)—O, O, S or NH;
- R5 is selected from H, halo, C1-6 alkyl, C1-6 haloalkyl, C5-20 aryl, C3-20 heteroaryl, OC1-6 alkyl, NH(C1-6 alkyl), N(C1-6 alkyl)2, peptides, sugars, C3-20 heterocyclyl and nucleic acids;
- Y is a protecting group selected from:
- R6 is selected from H, C1-6 alkyl, C1-6 haloalkyl, CO2H, CO2R′, SO2H, SO2R′, C5-20 aryl, C3-20 heteroaryl, NHC(O)R′ and NHR′;
- R7 and R8 are independently selected from H, OH, O(C1-6 alkyl), O(C5-20 aryl) and O(C3-20 heteroaryl);
- or R7 and R8 are linked together to form an O—CH2—O group;
- each R′ is independently selected from C1-6 alkyl, C1-6 haloalkyl and C5-20 aryl;
- R9 is selected from H, C1-6 alkyl, C1-6 haloalkyl, CO2H, CO2R′, SO2H, SO2R′ and C5-20 aryl;
- R10 is selected from H, C1-6 alkyl and C1-6 haloalkyl;
- R11 is selected from H, C1-6 alkyl and C1-6 haloalkyl;
- X5 is S, O, NH, N—C(O)—O—R′, N—S(O)2H, N—S(O)2R′ or NR′;
- Y1 is a protecting group selected from
- Y2 is a protecting group selected from
- t-Bu and CH2Ph;
- M+ is Li+, Na+, K+ or N(R13)4+;
- Z is Si or Ge;
- R12 is C1-6 alkyl or C(O)—(C5-20 aryl)
- R13 is H, C1-6 alkyl, allyl or C5-20 aryl;
- and
- Y3 is a protecting group
A PylRS tRNA synthetase comprising the mutations Y271C, N311Q, Y349F and V366C.
A method of capturing a substrate for an enzyme, the method comprising
- a) providing an enzyme comprising at least one 2,3-diamino propionic acid (DAP) group in its active site,
- b) contacting said enzyme with candidate substrate(s) for said enzyme, and
- c) incubating to allow reaction of said DAP group with said candidate substrate(s).
Dependencies are inferred from the claim text.