# US 2021/0275664 A1 · Prefusion coronavirus spike proteins and their use

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- Number: US 2021/0275664 A1
- Document ID: US20210275664A1
- Status: Published application
- Kind: A1
- Application number: 17/194,834
- Filed: 2021-03-08
- Published: 2021-09-09
- Earliest claimed: 2016-10-25
- Assignees: The United States of America, as represented by the Secretary, Department of Health and Human Servic; The Scripps Research Institute; Trustees of Dartmouth College
- Applicants: The United States of America, as represented by the Secretary, Department of Health and Human Servic; The Scripps Research Institute; Trustees of Dartmouth College
- Inventors: Barney Graham; Jason McLellan; Andrew Ward; Robert Kirchdoerfer; Christopher Cottrell; Michael Gordon Joyce; Masaru Kanekiyo; Nianshuang Wang; Jesper Pallesen; Hadi Yassine; Hannah Turner; Kizzmekia Corbett
- Web page: https://patentgrep.com/patent/US20210275664A1

## CPC

- A61K 39/12: Viral antigens
- A61K 39/215: Coronaviridae, e.g. avian infectious bronchitis virus
- A61P 31/14: for RNA viruses
- C07K 14/005: from viruses
- C12N 7/00: Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof (preparing medicinal viral antigen or antibody compositions, e.g. virus vaccines, A61K39/00)
- C12N 2770/20022: New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
- C12N 2770/20034: Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
- C12N 2770/20071: Demonstrated in vivo effect
- A61K: PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES (devices or methods specially adapted for bringing pharmaceutical products into particular physical or administering forms A61J3/00; chemical aspects of, or use of materials for deodorisation of air, for disinfection or sterilisation, or for bandages, dressings, absorbent pads or surgical articles A61L; soap compositions C11D)
- A61P: SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- C07K: PEPTIDES (peptides in foodstuffs A23; obtaining protein compositions for foodstuffs, working-up proteins for foodstuffs A23J; preparations for medicinal purposes A61K; peptides containing beta-lactam rings C07D; cyclic dipeptides not having in their molecule any other peptide link than those which form their ring, e.g. piperazine-2,5-diones, C07D; ergot alkaloids of the cyclic peptide type C07D519/02; macromolecular compounds having statistically distributed amino acid units in their molecules, i.e. when the preparation does not provide for a specific; but for a random sequence of the amino acid units, homopolyamides and block copolyamides derived from amino acids C08G69/00; macromolecular products derived from proteins C08H1/00; preparation of glue or gelatine C09H; single cell proteins, enzymes C12N; genetic engineering processes for obtaining peptides C12N15/00; compositions for measuring or testing processes involving enzymes C12Q; investigation or analysis of biological material G01N33/00)
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)

## Abstract

Coronavirus S ectodomain trimers stabilized in a prefusion conformation, nucleic acid molecules and vectors encoding these proteins, and methods of their use and production are disclosed. In several embodiments, the coronavirus S ectodomain trimers and/or nucleic acid molecules can be used to generate an immune response to coronavirus in a subject. In additional embodiments, the therapeutically effective amount of the coronavirus S ectodomain trimers and/or nucleic acid molecules can be administered to a subject in a method of treating or preventing coronavirus infection.

## Claims

### Claim 1

(canceled)

### Claim 2

An immunogen, comprising:
a recombinant coronavirus S ectodomain trimer comprising protomers comprising two proline substitutions between a heptad repeat 1 (HR1) and a central helix that stabilize the S ectodomain trimer in a prefusion conformation.

### Claim 3

A nucleic acid molecule encoding a recombinant coronavirus S protein comprising two proline substitutions between a heptad repeat 1 (HR1) and a central helix of the S protein.

### Claim 4 (depends on 3)

The nucleic acid molecule of claim 3, wherein the coronavirus is a betacoronavirus.

### Claim 5 (depends on 3)

The nucleic acid molecule of claim 3, wherein the coronavirus is one of MERS-CoV, SARS-CoV, NL63-CoV, 229E-CoV, OC43-CoV, HKU1-CoV, WIV1-CoV, MHV, HKU9-CoV, PEDV-CoV, or SDCV.

### Claim 6 (depends on 3)

The nucleic acid molecule of claim 3, wherein the recombinant coronavirus S protein further comprises a mutation to inhibit cleavage of a S1/S2 protease cleavage site.

### Claim 7 (depends on 3)

The nucleic acid molecule of claim 3, operably linked to a promoter.

### Claim 8 (depends on 3)

An immunogenic composition comprising the nucleic acid molecule of claim 3, and a pharmaceutically acceptable carrier.

### Claim 9 (depends on 3)

A method for generating an immune response to a coronavirus S protein in a subject, comprising administering to the subject an effective amount of the nucleic acid molecule of claim 3 to generate the immune response.

### Claim 10 (depends on 9)

The method of claim 9, wherein the immune response inhibits infection with the coronavirus.

### Claim 11 (depends on 3)

The nucleic acid molecule of claim 3, wherein the nucleic acid molecule is an mRNA molecule.

### Claim 12 (depends on 11)

The nucleic acid molecule of claim 11, wherein the coronavirus is a betacoronavirus.

### Claim 13 (depends on 11)

The nucleic acid molecule of claim 11, wherein the coronavirus is one of MERS-CoV, SARS-CoV, NL63-CoV, 229E-CoV, OC43-CoV, HKU1-CoV, WIV1-CoV, MHV, HKU9-CoV, PEDV-CoV, or SDCV.

### Claim 14 (depends on 11)

The nucleic acid molecule of claim 11, wherein the recombinant coronavirus S protein further comprises a mutation to inhibit cleavage of a S 1/S2 protease cleavage site.

### Claim 15 (depends on 11)

The nucleic acid molecule of claim 11, operably linked to a promoter.

### Claim 16 (depends on 11)

An immunogenic composition comprising the nucleic acid molecule of claim 11, and a pharmaceutically acceptable carrier.

### Claim 17 (depends on 11)

A method for generating an immune response to a coronavirus S protein in a subject, comprising administering to the subject an effective amount of the nucleic acid molecule of claim 11 to generate the immune response.

### Claim 18 (depends on 17)

The method of claim 17, wherein the immune response inhibits infection with the coronavirus.
