Method for modifying microcystins and nodularins
AssigneeCyano Biotech GmbH
InventorsHeike Enke, Wolfram Lorenzen, Stefan Jahns, Dan Enke, Timo Niedermeyer, Julia Moschny
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Abstract
A method is used for producing a modified non-ribosomal peptide, e.g. a modified microcystin and/or modified nodularin (together CA), including the steps of a) growing a modified non-ribosomal peptide producing cyanobacteria strain in a culture media, b) adding one or more modified substrates, preferably modified amino acids to said culture, and c) inoculating the non-ribosomal peptide, producing strain the presence of said modified substrates. The thus modified non-ribosomal peptide may be used for the therapy of various diseases.
Claims20
1-19. (canceled)
20:
- A method of producing a modified non-ribosomal peptide from cyanobacteria, comprising:
- a) growing a non-ribosomal peptide producing cyanobacteria strain in a culture medium,
- b) adding one or more modified substrates to said culture medium, and
- c) growing the cyanobacteria strain in the presence of said one or more modified substrates,
- wherein the one or more modified substrates are either
- i) a modified amino acid, which comprises an anchor group directly accessible or transformable for use in conjugation chemistry for the attachment of a targeting moiety or a label, or for additional structural modifications, or
- ii) a modified substrate, which is not directly derived from a naturally incorporated substrate.
21:
- The method according to claim 20, wherein the cyanobacteria strain is selected such that the incorporation of the one or more modified substrates into the non-ribosomal peptide occurs at a defined position.
22:
- The method according to claim 20, wherein the non-ribosomal peptide is a microcystin of the following general structure:
- D-Ala1-X2-D-MeAsp3-Z4-Adda5-DGlu6-Mdha7
- and wherein the one or more modified substrates are incorporated in at least one position other than Adda5 and DGlu6.
23:
- The method according to claim 22, wherein the incorporation of said one or more modified substrates occurs in position X2 and/or Z4.
24:
- The method according to claim 20, wherein the non-ribosomal peptide is a nodularin of the following general structure:
- D-MeAsp1-Arg2-Adda3-DGlu4-Mdhb5
- and wherein the one or more modified substrates are incorporated at any position other than Adda3 and DGlu4.
25:
- The method according to claim 24, wherein the incorporation of said one or more modified substrates occurs in position Arg2.
26:
- The method according to claim 22, wherein the modified position is X2 and the one or more modified substrates are a modified amino acid.
27:
- The method according to claim 22, wherein the modified position is Z4 and the one or more modified substrates are a modified amino acid.
28:
- The method according to claim 24, wherein the modified position is Arg2 and the one or more modified substrates are a modified amino acid.
29:
- The method according to claim 20, wherein the one or more modified substrate is at least one substrate selected from the group consisting of (2S)-2-amino-3-azidopropanoic acid, (2S)-2-amino-6-azidohexanoic acid, (S)-2-Amino-5-azidopentanoic acid, (2S)-2-amino-3-(4-prop-2-ynyloxyphenyl)propanoic acid, (2S)-2-amino-5-(N′-nitrocarbamimidamido)pentanoic acid, (2S)-2-amino-3-(furan-2-yl)propanoic acid, (S)-Amino-6-((prop-2-ynyloxy)carbonylamino)hexanoic acid, N-Propargyl-Lysine, (2S)-2-Amino-3-(4-azidophenyl)propanoic acid, and L-α-Amino-ε-guanidinohexanoic acid.
30:
- The method according to claim 22, wherein, independently of one another,
- D-Ala1 is selected from the group consisting of D-Ala, D-Ser and D-Leu,
- D-MeAsp3 is selected from the group consisting of D-MeAsp and D-Asp,
- Adda5 is selected from the group consisting of Adda, DM-Adda, (6Z)Adda and ADM-Adda,
- DGlu6 is selected from the group consisting of D-Glu and D-Glu(OCH3),
- Mdha7 is selected from the group consisting of Mdha, Dha, L-Ser, L-MeSer, Dhb, and MeLan, and
- X2 and/or Z4 comprise the at least one modified substrate.
31:
- The method according to claim 24, wherein, independently of one another,
- MeAsp1 is selected from the group consisting of D-MeAsp and D-Asp,
- Arg2 is selected from the group consisting of Arg and Homo-Arg,
- Adda3 is selected from the group consisting of Adda, DM-Adda, (6Z)Adda and Me-Adda,
- DGlu4 is selected from the group consisting of D-Glu and D-Glu(OCH3),
- Mdhb5 is selected from the group consisting of Mdhb and Dhb, and
- wherein the position for MeAsp1, Arg2 and Mdhb5 comprises the at least one modified substrate.
32:
- The method according to claim 20, wherein the concentration of the one or more modified substrates in the culture medium is between 5 μM and 500 μM and/or DMSO is added as an additional ingredient.
33:
- The method according to claim 20, wherein the conjugation chemistry is at least one selected from the group consisting of copper(I)-catalyzed azide-alkyne cycloaddition, strain promoted azide-alkyne cycloaddition, alkyne-azide cycloaddition, alkene-tetrazine inverse-demand Diels-Alder reaction, and reactions exploiting the specific reactivities of primary amines, thiols, aldehydes, carboxyls, and oximes.
34:
- The method according to claim 20, wherein the cyanobacteria strain is at least one selected from the group consisting of Microcystis, Planktothrix, Oscillatoria, Nostoc, Anabaena, Aphanizomenon, Hapalosiphon, Nodularia, Lyngbya, Phormidium, Spirulina, Halospirulina, Arthrospira, Trichodesmium, Leptolyngbya, Plectonema, Myxosarcina, Pleurocapsa, Pseudanabaena, Geitlerinema, Euhalothece, Calothrix, Tolypothrix, Scytonema, Fischerella, Mastigocladus, Westiellopsis, Stigonema, Chlorogloeopsis, Cyanospira, Cylindrospermopsis, Cylindrospermum, Microchaete, Rivularia, Autosira, Trichonema, Trichodesmium, Symploca, Starria, Prochlorothrix, Microcoleus, Limnothrix, Crinalium, Borzia, Chroococcidiopsis, Cyanocystis, Dermocarpella, Staniera, Xenococcus, Chamaesiphon, Chroococcus, Cyanobacterium, Cyanobium, Cyanothece, Dactylococcopsis, Gloeobacter, Gloeocapsa, and Gloeothece.
35:
- A method of producing a compound for targeted therapy comprising a non-ribosomal peptide linked to a targeting moiety, the method comprising:
- A) providing a targeting moiety and a non-ribosomal peptide comprising at least one modified amino acid, wherein the at least one modified amino acid comprises an anchor group directly accessible or transformable for use in conjugation chemistry by performing a method according to claim 20, and
- B) attaching said targeting moiety to said non-ribosomal peptide via chemical conjugation to said anchor group.
36:
- The method according to claim 35, wherein the targeting moiety is attached via a linker arranged between the modified amino acid and the targeting moiety.
37:
- The method according to claim 35, wherein the targeting moiety is an antibody.
38:
- The method according to claim 20, wherein the one or more modified substrates are the modified amino acid which comprises an anchor group directly accessible or transformable for use in click chemistry.