In vitro selection for nucleic acid aptamers
OwnerYingfu Li, John Brennan +1inventors
InventorsYingfu Li, John Brennan, Meng Liu
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Abstract
Provided herein are methods for selection of circular aptamers using a circular nucleic acid library. Also provided are circular aptamers, circular aptamer probes, biosensor systems, and the methods for their use in detecting a microorganism target, or a target molecule present on or generated from a microorganism or a virus in a test sample, including C. difficile glutamate dehydrogenase and methods for determining whether a subject has a C. difficile infection.
Claims20
A method of identifying or producing an aptamer capable of binding to a target molecule, wherein the method comprises:
- a) providing a plurality of circular nucleic acid molecules, wherein the plurality of circular nucleic acid molecules comprises oligonucleotides having at least one random nucleotide domain flanked by a 5′-end primer region and a 3′-end primer region;
- b) contacting the plurality of circular nucleic acid molecules with a bare solid support;
- c) collecting unbound circular nucleic acid molecules;
- d) contacting the unbound circular nucleic acid molecules with solid support coated with the target molecule to form a complex comprising bound circular nucleic acid molecules;
- e) optionally washing the complex;
- f) eluting the bound circular nucleic acid molecules from the complex;
- and
- g) amplifying the eluted circular nucleic acid molecules by polymerase chain reaction (PCR).
A circular DNA aptamer that binds to C. difficile glutamate dehydrogenase (GDH), wherein the circular DNA aptamer comprises a sequence of SEQ ID NO:
- 6, 7, 14, or 16, or a functional fragment or modified derivative thereof.
Dependencies are inferred from the claim text.