Engineered dcas9 with reduced toxicity and its use in genetic circuits
AssigneeMassachusetts Institute of Technology
InventorsChristopher A. Voigt, Shuyi Zhang
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Abstract
Disclosed herein are novel CRISPR/dCas9-based fusion proteins that facilitate the scaling up of genetic circuits, including those with non-linear response curves. The dCas9 based fusion proteins produce significantly less toxicity in comparison to previously described CRISPR/Cas9-based proteins used with logic gates. These improvements enable the generation of complex genetic circuits when both digital response curves and large amounts of dCas9 protein are needed. Also disclosed herein are methods of regulating expression of an output sequence through the introduction of novel CRISPR/dCas-9-based fusion proteins and genetic circuits into a cell.
Claims27
A genetic circuit comprising a single polynucleotide or a combination of polynucleotides, wherein the single polynucleotide or the combination of polynucleotides encode:
- (a) at least one fusion protein comprising a catalytically-inactive CRISPR/Cas protein fused to a transcription factor, wherein the catalytically-inactive CRISPR/Cas protein comprises a mutated PAM domain and a mutated or absent HNH domain,
- (b) at least one small guide RNA, and
- (c) at least one output sequence whose expression is operably linked to an output promoter, wherein the output promoter comprises a transcription factor operator and a cognate promoter comprising an sgRNA target site and, optionally, a PAM site.
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A fusion protein comprising a catalytically-inactive Cas9 protein linked by a C-terminal polypeptide bond to PhlF, wherein
- (a) the catalytically-inactive Cas9 protein comprises a mutated PAM domain, a mutated HNH domain, and a functional RuvCI domain, and
- (b) optionally, the catalytically-inactive Cas9 protein and the PhlF protein are separated by a linker peptide.
Dependencies are inferred from the claim text.