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US 2020/0051668 A1Published application
Method and system for the transmission of bioinformatics data
AssigneeGenomsys SA
InventorsGiorgio ZOIA, Daniele RENZI
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Abstract
Method and system for the transmission of genomic data. The transmission of genomic data is realized by employing the multiplexing of a structured compressed genomic dataset in a stream of genomic data partitioned into randomly accessible access units.
Claims19
A method for the transmission of genomic data as multiplexed data streams comprising
- a genomic dataset list data structure for providing a list of all genomic datasets, said genomic datasets comprising genomic data available in the genomic streams;
- a genomic dataset mapping table data structure for providing the identifier of each stream of said genomic data associated to each genomic dataset;
- and genomic datasets partitioned into randomly accessible access units
- said genomic streams comprising encoded aligned reads organized into multiple layers of homogeneous data descriptors to univocally represent genome sequence reads
- wherein in one layer it is stored the mapping position of the first read as absolute position with respect to the reference genome and
- all the other positions are expressed as a difference with respect to the previous position and are stored in a specific layer
- said method further comprising
- the compression of said layers of homogeneous data descriptors
- and the transmission of said data streams.
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Dependencies are inferred from the claim text.