# US 2019/0169656 A1 · Recombinant microorganism for the production of useful metabolites

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- Number: US 2019/0169656 A1
- Document ID: US20190169656A1
- Status: Published application
- Kind: A1
- Application number: 16/280,304
- Filed: 2019-02-20
- Published: 2019-06-06
- Earliest claimed: 2011-07-12
- Assignees: Scientist of Fortune, S.A.
- Applicants: Scientist of Fortune, S.A.
- Inventors: Philippe Marlière
- Web page: https://patentgrep.com/patent/US20190169656A1

## CPC

- C12P 7/28: Acetone-containing products
- C12N 9/16: acting on ester bonds (3.1)
- C12N 9/88: Lyases (4.)
- C12N 15/63: Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12P 5/026: {Unsaturated compounds, i.e. alkenes, alkynes or allenes}
- C12P 17/182: {Heterocyclic compounds containing nitrogen atoms as the only ring heteroatoms in the condensed system (alloxazine or isoalloxazine, e.g. riboflavine C12P25/00)}
- C12P 19/32: having a condensed ring system containing a six-membered ring having two N-atoms in the same ring, e.g. purine nucleotides, nicotineamide-adenine dinucleotide
- C12Y 301/03011: Fructose-bisphosphatase (3.1.3.11)
- C12Y 401/02009: Phosphoketolase (4.1.2.9)
- C12Y 401/02022: Fructose-6-phosphate phosphoketolase (4.1.2.22)
- Y02P 20/52: using catalysts, e.g. selective catalysts
- C12P: FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE {(brewing of beer C12C; producing vinegar C12J; producing specific peptides or proteins C07K; producing enzymes C12N9/00; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification C12N15/00; measuring or testing processes involving enzymes or microorganisms C12Q; measuring or testing processes involving nucleic acid amplification reactions C12Q1/6844; fermentation processes to form a food composition, A21 or A23; compounds in general, see the relevant compound class, e.g. C01, C07)}
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)
- C12Y: ENZYMES
- Y02P: CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS

## Abstract

Described are recombinant microorganisms characterized by having phosphoketolase activity, having a diminished or inactivated Embden-Meyerhof-Parnas pathway (EMPP) by inactivation of the gene(s) encoding phosphofructokinase or by reducing phosphofructokinase activity as compared to a non-modified microorganism and having a diminished or inactivated oxidative branch of the pentose phosphate pathway (PPP) by inactivation of the gene(s) encoding glucose-6-phosphate dehydrogenase or by reducing glucose-6-phosphate dehydrogenase activity as compared to a non-modified microorganism. These microorganisms can be used for the production of useful metabolites such as acetone, isobutene or propene.

## Claims

### Claim 1

A recombinant microorganism characterized by:
a) having phosphoketolase activity;
b) (i) having a diminished or inactivated Embden-Meyerhof-Parnas pathway (EMPP) by inactivation of the gene(s) encoding phosphofructokinase or by being genetically modified so as to reduce phosphofructokinase activity as compared to a non-genetically modified microorganism; or
(ii) not possessing phosphofructokinase activity; and
c) (i) having a diminished or inactivated oxidative branch of the pentose phosphate pathway (PPP) by inactivation of the gene(s) encoding glucose-6-phosphate dehydrogenase or by being genetically modified so as to reduce glucose-6-phosphate dehydrogenase activity as compared to a non-genetically modified microorganism; or
(ii) not possessing glucose-6-phosphate dehydrogenase activity, and
d) furthermore characterized in that the activity of one or more of the enzymes selected from the group consisting of:
formate C-acetyltransferase, classified as EC 2.3.1.54;
acetate kinase, classified as EC 2.7.2.1
L-lactate dehydrogenase, classified as EC 1.1.1.28
phosphoenolpyruvate carboxylase, classified as EC 4;1.1.31
phosphoenolpyruvate carboxykinase, classified as (ATP) EC 4.1,1.49
succinate dehydrogenase, classified as EC 1.3.99.1
pyruvate decarboxylase, classified as EC 4.1.1.1
acetaldehyde dehydrogenase (acetylating), classified as EC 1.2.1.10
glycerol-3-phosphate dehydrogenase [NAD(P)+], classified as EC 1.1.1.94
acetolactate synthase, classified as EC 2.2.1.6
methylglyoxal synthase, classified as EC 4.2.3.3
formate hydrogenlyase, classified as EC 1.2.1.2 together with EC 1.12.1.2
is eliminated or reduced.

### Claim 2 (depends on 1)

The recombinant microorganism of claim 1 further characterized by:
d) having fructose-1,6-bisphosphate phosphatase activity.

### Claim 3 (depends on 1)

The recombinant microorganism of claim 1, wherein the EMPP is further diminished or inactivated by inactivation of the gene(s) encoding glyceraldehyde 3-phosphate dehydrogenase or by being genetically modified so as to reduce glyceraldehyde 3-phosphate dehydrogenase activity as compared to a non-genetically modified microorganism.

### Claim 4 (depends on 1)

The recombinant microorganism of claim 1 which has been genetically modified to have an increased phosphoketolase activity.

### Claim 5 (depends on 1)

The recombinant microorganism of claim 1, wherein said microorganism is a fungus.

### Claim 6 (depends on 1)

The recombinant microorganism of claim 1, wherein said microorganism is a bacterium.

### Claim 7 (depends on 6)

The recombinant microorganism of claim 6, wherein the gene(s) encoding the PEP-dependent PTS transporter has/have been inactivated.

### Claim 8 (depends on 1)

The recombinant microorganism of claim 1 further characterized in that it:
e) is capable of converting acetyl-CoA into acetone.

### Claim 9 (depends on 8)

The recombinant microorganism of claim 8 further characterized in that it:
f) is capable of converting acetone into isobutene.

### Claim 10 (depends on 8)

The recombinant microorganism of claim 8 further characterized in that it:
g) is capable of converting acetone into propene.

### Claim 11 (depends on 1)

Use of the recombinant microorganism of claim 1 for the conversion of glucose into acetyl-CoA.

### Claim 12 (depends on 8)

Use of the recombinant microorganism of claim 8 for the conversion of glucose into acetone.

### Claim 13 (depends on 9)

Use of the recombinant microorganism of claim 9 for the conversion of glucose into isobutene.

### Claim 14 (depends on 10)

Use of the recombinant microorganism of claim 10 for the conversion of glucose into propene.

### Claim 15 (depends on 8)

A method for producing acetone from glucose comprising the steps of:
culturing the microorganism of claim 8 in a suitable medium; and
optionally recovering said acetone from the culture medium.

### Claim 16 (depends on 9)

A method for producing isobutene from glucose comprising the steps of:
culturing the microorganism of claim 9 in a suitable medium; and
optionally recovering said isobutene.

### Claim 17 (depends on 10)

A method for producing propene from glucose comprising the steps of:
culturing the microorganism of claim 10 in a suitable medium; and
optionally recovering said propene.

### Claim 18 (depends on 6)

The recombinant microorganism of claim 6, which is E. coli.

### Claim 19 (depends on 8)

The recombinant microorganism of claim 8, wherein the fnr gene and/or the rpoS gene are deleted.
