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US 2019/0100518 A1Published application
Indole structure-selective crosslinking agent and composite in which same is used
AssigneeThe University of Tokyo
InventorsMotomu KANAI, Kounosuke OISAKI, Yohei SEKI, Daisuke SASAKI, Takashi ISHIYAMA
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Abstract
The present invention relates to a cross-linking agent for cross-linking an indole-structure-containing molecule to a desired molecule, the cross-linking agent containing, as an effective component, a radical compound having an N-oxy radical group and a group capable of bonding to the desired molecule.
Claims20
1:
- A cross-linking agent suitable for cross-linking an indole-structure-containing molecule to a desired molecule, the cross-linking agent comprising a compound having an N-oxy radical group and a group capable of bonding to the desired molecule.
2:
- The cross-linking agent according to claim 1, wherein the N-oxy radical group is a dialkylaminooxy radical group.
3:
- The cross-linking agent according to claim 1, comprising as an effective component an ABNO derivative represented by Formula (I):
- wherein in the formula,
- at least one of the groups A, B, C, D, E1, and E2 is a group capable of bonding to the desired molecule;
- A, B, C, D, E1, and E2 each independently represent CR1R2;
- C═CR3R4;
- C═O;
- C═S;
- C═NR5;
- NR5;
- SiR6R7;
- an oxygen atom;
- or a heteroatom other than a nitrogen atom, silicon atom, or oxygen atom;
- F and G each represent CR8 or a nitrogen atom;
- R1, R2, R3, R4, R5, R6, R7, and R8 each independently represent a hydrogen atom;
- halogen atom;
- heteroatom group;
- C1-C30 alkyl group which is optionally substituted, C2-C30 alkenyl group which is optionally substituted, C2-C30 alkynyl group which is optionally substituted, C6-C30 aryl group which is optionally substituted, C4-C30 heteroaryl group which is optionally substituted, C7-C30 aralkyl group which is optionally substituted, or C3-C30 cycloalkyl group which is optionally substituted;
- C1-C30 alkyloxy group which is optionally substituted, C2-C30 alkenyloxy group which is optionally substituted, C2-C30 alkynyloxy group which is optionally substituted, C6-C30 aryloxy group which is optionally substituted, C4-C30 heteroaryloxy group which is optionally substituted, C7-C30 aralkyloxy group which is optionally substituted, or C3-C30 cycloalkyloxy group which is optionally substituted;
- polyalkyleneoxy group which is optionally substituted;
- or reactive functional group;
- with the proviso that R5 is not a halogen atom;
- and
- E1 and E2 optionally together form a —CH(CH2)mCH— group which is optionally substituted, wherein m represents an integer of 0 to 12.
20 more elements
4:
- The cross-linking agent according to claim 3, wherein
- A, B, C, and D each represent CH2;
- and
- one of E1 and E2 represents CH2, an oxygen atom, or a sulfur atom, and the other represents CR1R2, C═CR3R4, C═O, C═S, C═NR5, NR5, or SiR6R7;
- or
- E1 and E2 together form a —CH(CH2)mCH— group which is optionally substituted.
3 more elements
5:
- The cross-linking agent according to claim 3, wherein the reactive functional group is a functional group having, as a group or a part of a group, an alcohol group, epoxy group, acetal group, orthoester group, ester group, carbonyl group, carboxyl group, anhydrous carboxylic acid group, amide group, imidate group, amino group, imino group, aziridine group, diazo group, azide group, amidyl group, guanidyl group, hydrazyl group, hydrazone group, alkoxyamino group, oxime group, carbonate group, carbamate group, sulfhydryl group, ether group, imide group, thioester group, thioamide group, isothiocyano group, thioether group, disulfide group, halogen group, isocyano group, isocyanate group, oxazirine group, diaziridine group, sulfonyl group, sulfone group, sulfoxide group, sulfonimide group, seleno group, silyl group, boryl group, stannyl group, phosphine group, phosphine oxide group, phosphate group, phosphoric acid ester group, phosphoric acid amide group, methylene group, alkenyl group, or alkynyl group, or a combination thereof.
6:
- The cross-linking agent according to claim 3, wherein
- A, B, C, and D each represent CH2;
- and
- one of E1 and E2 represents CH2 or an oxygen atom, and the other represents C═O, CHNH2, CH(CO)NH2, or C═NOH.
1 more element
7:
- The cross-linking agent according to claim 3, wherein one of E1 and E2 represents CH2, and the other represents C═O, CHNH2, CH(CO)NH2, or C═NOH.
8:
- The cross-linking agent according to claim 3, which is suitable for bonding the desired molecule to the indole structure in the indole-structure-containing molecule.
9:
- The cross-linking agent according to claim 8, wherein the indole structure is represented by Formula (II):
- wherein in the formula,
- X1, X2, X3, X4, Y2, and Y3 each independently represent a hydrogen atom;
- or a functional group capable of substituting a hydrogen atom on an indole ring;
- the functional group capable of substituting a hydrogen atom on an indole ring is optionally a halogen atom;
- heteroatom group;
- C1-C30 alkyl group which is optionally substituted, C2-C30 alkenyl group which is optionally substituted, C2-C30 alkynyl group which is optionally substituted, C6-C30 aryl group which is optionally substituted, C4-C30 heteroaryl group which is optionally substituted, C7-C30 aralkyl group which is optionally substituted, or C3-C30 cycloalkyl group which is optionally substituted;
- C1-C30 alkyloxy group which is optionally substituted, C2-C30 alkenyloxy group which is optionally substituted, C2-C30 alkynyloxy group which is optionally substituted, C6-C30 aryloxy group which is optionally substituted, C4-C30 heteroaryloxy group which is optionally substituted, C7-C30 aralkyloxy group which is optionally substituted, or C3-C30 cycloalkyloxy group which is optionally substituted;
- or polyalkyleneoxy group which is optionally substituted;
- at least two of the groups X1, X2, X3, X4, Y2, and Y3 optionally together form a 4- to 10-membered ring;
- and
- Y1 represents a hydrogen atom, or a functional group capable of substituting a hydrogen atom on nitrogen.
9 more elements
10:
- The cross-linking agent according to claim 9, wherein
- X1, X2, X3, X4, Y1, and Y2 each represent a hydrogen atom;
- Y3 represents —(CH2)oCGF1F2;
- O represents an integer of 0 to 10;
- G represents hydrogen, alkyl group, alkyloxy group, or aryl group;
- F1 and F2 each independently represent —NR9COZ1 or —CONR10Z2;
- R9 and R10 each independently represent a hydrogen atom;
- or a functional group capable of substituting a hydrogen atom on an amide group;
- the functional group capable of substituting a hydrogen atom on an amide group is optionally a C1-C30 alkyl group which is optionally substituted, C2-C30 alkenyl group which is optionally substituted, C2-C30 alkynyl group which is optionally substituted, C6-C30 aryl group which is optionally substituted, C4-C30 heteroaryl group which is optionally substituted, C7-C30 aralkyl group which is optionally substituted, or C3-C30 cycloalkyl group which is optionally substituted;
- C1-C30 alkyloxy group which is optionally substituted, C2-C30 alkenyloxy group which is optionally substituted, C2-C30 alkynyloxy group which is optionally substituted, C6-C30 aryloxy group which is optionally substituted, C4-C30 heteroaryloxy group which is optionally substituted, C7-C30 aralkyloxy group which is optionally substituted, or C3-C30 cycloalkyloxy group which is optionally substituted;
- or polyalkyleneoxy group which is optionally substituted;
- and
- Z1 and Z2 are each a natural product, a synthetic product, or a linked body thereof.
10 more elements
11:
- The cross-linking agent according to claim 1, wherein the indole-structure-containing molecule is a peptide containing tryptophan.
12:
- The cross-linking agent according to claim 1, wherein the desired molecule is a drug, toxin, labeling substance, fiber, peptide, protein, nucleic acid, cell, organic electronic material, or polymer material.
13:
- A conjugate cross-linked through the compound recited in claim 1.
14:
- The conjugate according to claim 13, which is a conjugate formed by bonding of a desired molecule to an indole structure in an indole-structure-containing molecule, wherein the indole structure is cross-linked to the desired molecule through an ABNO derivative.
15:
- The conjugate according to claim 13, comprising the structure of Formula (III):
- wherein in the formula,
- T is the desired molecule linked to the condensed bicyclic structure in Formula (III);
- Q is a group represented by either Formula (IV) or Formula (V):
- wherein in the formulae,
- X1, X2, X3, X4, and Y2 are each a hydrogen atom;
- or a functional group capable of substituting a hydrogen atom on an indole ring;
- Y1 represents a functional group capable of substituting a hydrogen atom on a nitrogen atom;
- R9 and R10 are each a hydrogen atom;
- or a capable group capable of substituting a hydrogen atom on an amide group;
- at least two of the groups X1, X2, X3, and X4 optionally together form a 4- to 10-membered ring;
- G represents hydrogen, alkyl group, alkyloxy group, or aryl group;
- and
- Z1 and Z2 are each a natural product, a synthetic product, or a linked body thereof.
11 more elements
16:
- The conjugate according to claim 15, wherein X1, X2, X3, X4, and G each represent a hydrogen atom.
17:
- A method for producing a conjugate in which a desired molecule is bound to an indole structure in an indole-structure-containing molecule, the method comprising cross-linking the indole-structure-containing molecule to the desired molecule through a compound having an N-oxy radical group and a group capable of bonding to the desired molecule.
18:
- The on method according to claim 17, further comprising allowing the desired molecule to act on the compound, and then allowing the compound, to which the desired molecule is bound, to act on the indole structure in the indole-structure-containing molecule.
19:
- The method according to claim 17, further comprising allowing the compound to act on the indole structure in the indole-structure-containing molecule, and then allowing the desired molecule to act on the compound bound to the indole-structure-containing molecule.
20:
- The method according to claim 17, wherein the cross-linking reaction is carried out in an aqueous solvent.