# US 2018/0282782 A1 · Designing Customized Protein-Specific Buffer System

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- Number: US 2018/0282782 A1
- Document ID: US20180282782A1
- Status: Published application
- Kind: A1
- Application number: 15/761,936
- Filed: 2016-09-22
- Published: 2018-10-04
- Earliest claimed: 2015-09-22
- Assignees: Delta Tm Technologies
- Applicants: Delta Tm Technologies
- Inventors: Shawn CLARK; Jeffrey SIGNOR
- Web page: https://patentgrep.com/patent/US20180282782A1

## CPC

- C12Q 1/34: involving hydrolase
- B01L 3/50851: {specially adapted for heating or cooling samples}
- C12Q 1/533: involving isomerase
- C12Y 306/05005: Dynamin GTPase (3.6.5.5)
- C12Y 502/01014: Beta-carotene isomerase (5.2.1.14)
- G01N 33/6803: {General methods of protein analysis not limited to specific proteins or families of proteins}
- B01L 2200/16: Reagents, handling or storing thereof
- C12Q: MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS (immunoassay G01N33/53); COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- B01L: CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- C12Y: ENZYMES
- G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q)

## Abstract

The present invention is related to the field of protein chemistry. In particular, mixed buffer compositions are formulated that allow an accurate identification of agent-induced changes in protein melting point temperatures. Such buffer compositions provide for methods that determine the specific effects of exogenous agents on protein stability, cryoprotective effects and/or protein quality control (e.g., synthesis and/or extraction purity validations).

## Claims

### Claim 1

A device, comprising:
a) a solid substrate comprising a plurality of testing wells and a control well, wherein each of said plurality of testing wells comprises a first buffer and a second buffer, said control well comprises a sample buffer, and each of said plurality of testing wells and control well comprises a protein sample;
b) a first testing well series of said plurality of testing wells, wherein each well of said first testing well series comprises a different ammonium sulphate concentration;
c) a second testing well series of said plurality of testing wells, wherein each well of said second testing well series comprises a different amino acid;
d) a third testing well series of said plurality of testing wells, wherein each well of said third testing well series comprises a different urea concentration;
e) a fourth testing well series of said plurality of testing wells, wherein each well of said fourth testing well series comprises a different glycerol concentration;
f) a fifth testing well series of said plurality of testing wells, wherein each well of said fifth testing well series comprises a different hydrogen ion concentration;
g) a sixth testing well series of said plurality of testing wells, wherein each well of said sixth testing well series comprises a different third buffer;
h) a seventh testing well series of said plurality of testing wells, wherein each well of said seventh testing well series comprises a different dimethyl sulfoxide concentration;
i) an eighth testing well series of said plurality of testing wells, wherein each well of said eighth testing well series comprises a different Hoefmeister Series compound; and
j) a ninth testing well series of said plurality of testing wells, wherein each well of said ninth testing well series comprises an different metal ion.

### Claim 2 (depends on 1)

The device of claim 1, wherein said device is configured for compatibility with a thermocycler.

### Claim 3 (depends on 1)

The device of claim 1, wherein said device is configured for compatibility with an optical reaction module configured with an optically readable storage medium device.

### Claim 4 (depends on 1)

The device of claim 1, wherein a first buffer is selected from the group consisting of MES, citrate and cacodylate.

### Claim 5 (depends on 1)

The device of claim 1, wherein said second buffer is selected from the group consisting of bis-tris propane, bicine and HEPES.

### Claim 6

A device, comprising:
a) a solid substrate comprising a plurality of testing wells and a control well, wherein each of said plurality of testing wells comprises a first buffer and a second buffer, said control well comprises a sample buffer, and each of said testing wells and control well comprises a protein sample;
b) a first testing well series of said plurality of testing wells, wherein each well of said first testing well series comprises a different ethylene glycol concentration;
c) a second testing well series of said plurality of testing wells, wherein each well of said second testing well series comprises a different polyethylene glycol 3350 MME concentration;
d) a third testing well series of said plurality of testing wells, wherein each well of said third testing well series comprises a different erythritol concentration;
e) a fourth testing well series of said plurality of testing wells, wherein each well of said fourth testing well series comprises a different 2-methyl-2,4 pentanediol concentration;
f) a fifth testing well series of said plurality of testing wells, wherein each well of said fifth testing well series comprises a different polyethylene glycol 6000 concentration;
g) a sixth testing well series of said plurality of testing wells, wherein each well of said sixth testing well series comprises a different sodium malonate concentration;
h) a seventh testing well series of said plurality of testing wells, wherein each well of said seventh testing well series comprises a different ethanol concentration;
i) an eighth testing well series of said plurality of testing wells, wherein each well of said eighth testing well series comprises a different polyethylene glycol 10,000 concentration;
j) a ninth testing well series of said plurality of testing wells, wherein each well of said ninth testing well series comprises an different glycerol concentration;
k) a tenth testing well series of said plurality of testing wells, wherein each well of said tenth testing well series comprises a different xylitol concentration;
l) an eleventh testing well series of said plurality of testing wells, wherein each well of said eleventh testing well series comprises a different sucrose concentration;
m) a twelfth testing well series of said plurality of testing wells, wherein each well of said twelfth testing well series comprises a different trehalose dihydrate concentration;
n) a thirteenth testing well series of said plurality of testing wells, wherein each well of said thirteenth testing well series comprises a different 1,6 hexanediol concentration; and
n) a fourteenth testing well series of said plurality of testing wells, wherein each well of said fourteenth testing well series comprises a different 1,2 propanediol concentration.

### Claim 7 (depends on 6)

The device of claim 6, wherein said device is configured for compatibility with a thermocycler.

### Claim 8 (depends on 6)

The device of claim 6, wherein said device is configured for compatibility with an optical reaction module configured with an optically readable storage medium device.

### Claim 9 (depends on 6)

The device of claim 6, wherein said first buffer is selected from the group consisting of MES, citrate and cacodylate.

### Claim 10 (depends on 6)

The device of claim 6, wherein said second buffer is selected from the group consisting of bis-tris propane, bicine and HEPES.

### Claim 11

A device, comprising:
a) a solid substrate comprising a plurality of testing wells and a control well, wherein each of said plurality of testing wells comprises a first buffer and a second buffer, said control well comprises a sample buffer, and each of said testing wells and control well comprises a protein sample;
b) a first testing well series of said plurality of testing wells comprising a first hydrogen ion concentration, wherein each well of said first testing well series comprises a different sodium chloride concentration;
c) a second testing well series of said plurality of testing wells comprising a second hydrogen ion concentration, wherein each well of said second testing well series comprises a different sodium chloride concentration;
d) a third testing well series of said plurality of testing wells comprising a third hydrogen ion concentration, wherein each well of said third testing well series comprises a different sodium chloride concentration;
e) a fourth testing well series of said plurality of testing wells comprising a fourth hydrogen ion concentration, wherein each well of said fourth testing well series comprises a different sodium chloride concentration;
f) a fifth testing well series of said plurality of testing wells comprising a fifth hydrogen ion concentration, wherein each well of said fifth testing well series comprises a different sodium chloride concentration;
g) a sixth testing well series of said plurality of testing wells comprising a sixth hydrogen ion concentration, wherein each well of said sixth testing well series comprises a different sodium chloride concentration;
h) a seventh testing well series of said plurality of testing wells comprising a seventh hydrogen ion concentration, wherein each well of said seventh testing well series comprises a different sodium chloride concentration;
i) an eighth testing well series of said plurality of testing wells comprising an eighth hydrogen ion concentration, wherein each well of said eighth testing well series comprises a different sodium chloride concentration; and
j) a ninth testing well series of said plurality of testing wells comprising a ninth hydrogen ion concentration, wherein each well of said ninth testing well series comprises a different sodium chloride concentration.

### Claim 12 (depends on 11)

The device of claim 11, wherein said device is configured for compatibility with a thermocycler.

### Claim 13 (depends on 11)

The device of claim 11, wherein said device is configured for compatibility with an optical reaction module configured with an optically readable storage medium device.

### Claim 14 (depends on 11)

The device of claim 11, wherein said first buffer is selected from the group consisting of MES, citrate and cacodylate.

### Claim 15 (depends on 11)

The device of claim 11, wherein said second buffer is selected from the group consisting of bis-tris propane, bicine and HEPES.

### Claim at position 16

16-66. (canceled)
