Method and electronic system for predicting at least one fitness value of a protein, related computer program product
AssigneePeaccel
InventorsNicolas Fontaine, Frédéric Cadet
Life of this patent
Estimating the term…
Abstract
A method for predicting at least one fitness value of a protein is implemented on a computer and includes the following steps: encoding the amino acid sequence of the protein into a numerical sequence according to a protein database, the numerical sequence comprising a value for each amino acid of the sequence; calculating a protein spectrum according to the numerical sequence; and for each fitness: comparing the calculated protein spectrum with protein spectrum values of a predetermined database, said database containing protein spectrum values for different values of said fitness, predicting a value of said fitness according to the comparison step.
Claims15
A method for predicting at least one fitness value of a protein, the method being implemented on a computer and including the following steps:
- encoding the amino acid sequence of the protein into a numerical sequence according to a protein database, the numerical sequence comprising a value for each amino acid of the sequence;
- calculating a protein spectrum according to the numerical sequence;
- and for each fitness:
- comparing the calculated protein spectrum with protein spectrum values of a predetermined database, said database containing protein spectrum values for different values of said fitness,
- predicting a value of said fitness according to the comparison step.
An electronic prediction system for predicting at least one fitness value of a protein, the electronic prediction system including:
- an encoding module configured for encoding the amino acid sequence into a numerical sequence according to a protein database, the numerical sequence comprising a value for each amino acid of the sequence;
- a calculation module configured for calculating a protein spectrum according to the numerical sequence;
- and
- a prediction module configured for, for each fitness:
- comparing the calculated protein spectrum with protein spectrum values of a predetermined database, said database containing protein spectrum values for different values of said fitness, and
- predicting a value of said fitness according to said comparison.
Dependencies are inferred from the claim text.