Oligonucleotide analogues targeting human lmna
AssigneeSarepta Therapeutics, Inc.
InventorsRyszard Kole, Richard Keith Bestwick
Life of this patent
Estimating the term…
Abstract
Provided are LMNA-targeted antisense oligonucleotides for reducing expression of one or more aberrantly spliced LMNA mRNA isoforms that encode progerin.
Claims20
An antisense oligonucleotide for use in modulating aberrant splicing of a human LMNA pre-mRNA, the oligonucleotide being composed of morpholino subunits and phosphorus-containing intersubunit linkages joining a morpholino nitrogen of one subunit to a 5′-exocyclic carbon of an adjacent subunit,
- containing 25-40 bases;
- and
- having a targeting sequence comprising any one of SEQ ID NOs:
- 3-8, 10-18, and 20-34,
- wherein the antisense oligonucleotide is covalently attached to a cell-penetrating peptide and linker moiety of the formula -G-CPP, wherein G is the linker moiety and is selected from glycine, cysteine, proline, 6-aminohexanoic acid (Ahx), β-alanine (B), and Ahx-B, and CPP is the cell-penetrating peptide and is selected from SEQ ID NOS:
- 39-54.
-16. (canceled)
-25. (canceled)
An antisense oligonucleotide, wherein the oligonucleotide modulates aberrant splicing of a human LMNA pre-mRNA, the oligonucleotide comprising a backbone, the backbone comprising a sequence of morpholino ring structures joined by intersubunit linkages, the intersubunit linkages joining a 3′-end of one morpholino ring structure to a 5′-end of an adjacent morpholino ring structure, wherein each morpholino ring structure is bound to a base-pairing moiety, such that the oligonucleotide can bind in a sequence-specific manner to a target nucleic acid, comprising a targeting sequence comprising any one of SEQ ID NOS:
- 3-8, 10-18 and 20-34, wherein the intersubunit linkages have the following general structure (I):
- or a salt or isomer thereof, and wherein each of the intersubunit linkages (I) are independently linkage (A) or linkage (B):
- wherein for linkage (A):
- W is, at each occurrence, independently S or O;
- X is, at each occurrence, independently —N(CH3)2, —NR1R2, —OR3 or;
- Y is, at each occurrence, independently O or —NR2,
- R1 is, at each occurrence, independently hydrogen or methyl;
- R2 is, at each occurrence, independently hydrogen or -LNR4R5R7;
- R3 is, at each occurrence, independently hydrogen or C1-C6 alkyl;
- R4 is, at each occurrence, independently hydrogen, methyl, —C(═NH)NH2, —Z-L-NHC(═NH)NH2 or —[C(O)CHR′NH]mH, where Z is carbonyl (C(O)) or a direct bond, R′ is a side chain of a naturally occurring amino acid or a one- or two-carbon homolog thereof, and m is 1 to 6;
- R5 is, at each occurrence, independently hydrogen, methyl or an electron pair;
- R6 is, at each occurrence, independently hydrogen or methyl;
- R7 is, at each occurrence, independently hydrogen, C1-C6 alkyl or C1-C6 alkoxyalkyl;
- L is an optional linker up to 18 atoms in length comprising alkyl, alkoxy or alkylamino groups, or combinations thereof;
- and
- wherein for linkage (B):
- W is, at each occurrence, independently S or O;
- X is, at each occurrence, independently —NR8R9 or —OR3;
- and
- Y is, at each occurrence, independently O or —NR1,
- R8 is, at each occurrence, independently hydrogen or C2-C12 alkyl;
- R9 is, at each occurrence, independently hydrogen, C1-C12 alkyl, C1-C12 aralkyl or aryl;
- R10 is, at each occurrence, independently hydrogen, C1-C12 alkyl or -LNR4R5R7;
- wherein R8 and R9 may join to form a 5-18 membered mono or bicyclic heterocycle or R8, R9 or R3 may join with R10 to form a 5-7 membered heterocycle, and wherein when X is 4-piperazinyl, X has the following structure (III):
- wherein:
- R11 is, at each occurrence, independently C2-C12 alkyl, C1-C12 aminoalkyl, C1-C12 alkylcarbonyl, aryl, heteroaryl or heterocyclyl;
- and
- R is, at each occurrence, independently an electron pair, hydrogen or C1-C12 alkyl;
- and
- R12 is, at each occurrence, independently, hydrogen, C1-C12 alkyl, C1-C12 aminoalkyl, —NH2, —NR13R14, —NR13R14R15, C1-C12 alkylcarbonyl, oxo, —CN, trifluoromethyl, amidyl, amidinyl, amidinylalkyl, amidinylalkylcarbonyl guanidinyl, guanidinylalkyl, guanidinylalkylcarbonyl, cholate, deoxycholate, aryl, heteroaryl, heterocycle, —SR13 or C1-C12 alkoxy, wherein R13, R14 and R15 are, at each occurrence, independently C1-C12 alkyl;
- and
- wherein the antisense oligonucleotide is covalently attached to a cell-penetrating peptide and linker moiety of the formula -G-CPP, wherein G is the linker moiety selected from glycine, cysteine, proline, 6-aminohexanoic acid (Ahx), β-alanine (B), and Ahx-B, and CPP is the cell-penetrating peptide and is selected from SEQ ID NOS:
- 39-54.
Dependencies are inferred from the claim text.