Compounds and methods for the treatment of isocitrate dehydrogenase related diseases
AssigneesThe Broad Institute, Inc., President and Fellows of Harvard College
InventorsMahmud Hussain, Daisuke Ito, Jason Law, Matthias Leiendecker, Ke Liu, Benito Munoz, Stuart Schreiber, Alykhan Shamji, Andrew Stern
Life of this patent
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Abstract
The invention relates to compounds of Formula I or a pharmaceutically acceptable salt, ester or prodrug thereof:
Claims47
A compound of Formula IA, IB, IC or ID, or a pharmaceutically acceptable salt, ester or prodrug thereof:
- wherein each n and m is independently 0, 1, 2 or 3;
- each p and q is independently 0, 1, 2, 3, 4, 5, 6 or 7;
- X1 is —C(O)N(RA)— or —C(S)N(RA)—;
- wherein RA is independently hydrogen, aliphatic, substituted aliphatic, heteroaryl, substituted heteroaryl, aryl or substituted aryl;
- X2 is —S——O—, —S(O)2— —C(R20)(R21)— or —N(RB)—;
- wherein RB is independently hydrogen, aliphatic, substituted aliphatic, heteroaryl, substituted heteroaryl, aryl or substituted aryl;
- each R1 and R2 is independently hydrogen, halogen, aliphatic, substituted aliphatic, aryl or substituted aryl;
- R3 is hydrogen, halogen, aliphatic, substituted aliphatic, aryl or substituted aryl;
- each R10, and R28 is independently absent, hydrogen, halogen, —OR20, —SR20, —NR20R21, —CF3, —CN, —NO2, —N3, —C(O)OR20, —C(O)R20, —C(O)NR20R21, acyl, alkoxy, substituted alkoxy, alkylamino, substituted alkylamino, dialkylamino, substituted dialkylamino, substituted or unsubstituted alkylthio, substituted or unsubstituted alkylsulfonyl, aliphatic, substituted aliphatic, aryl or substituted aryl;
- alternatively two of R10 groups together with the atoms to which they are attached and any intervening atoms may form an additional optionally substituted, 3, 4, 5, 6 or 7 membered ring;
- wherein each R20 and R21 is independently hydrogen, halogen, aliphatic, substituted aliphatic, aryl or substituted aryl;
- each R11 is independently absent, hydrogen, halogen, —OR20, —SR20, —NR20R21, —CF3, —CN, —NO2, —N3, —C(O)R20, —C(O)OR20, —C(O)NR20R21, acyl, alkoxy, substituted alkoxy, alkylamino, substituted alkylamino, dialkylamino, substituted dialkylamino, substituted or unsubstituted alkylthio, substituted or unsubstituted alkylsulfonyl, aliphatic, substituted aliphatic, aryl or substituted aryl;
- alternatively two of R11 groups together with the atoms to which they are attached and any intervening atoms may form an additional optionally substituted, 3, 4, 5, 6 or 7 membered ring;
- each G1 and G2 is independently, absent, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl or substituted alkynyl;
- each R27 and R29 is independently hydrogen, alkyl, substituted alkyl, aryl or substituted aryl;
- wherein R3a is selected from alkyl, aryl, alkyl substituted with aryl, straight chain or branched C1-C10 alkyl, C1-C10 alkenyl, C1-C10 alkynyl, C1-C10 alkoxy, alkoxyC1-C10alkoxy, C1-C10alkylamino, alkoxyC1-C10alkylamino, C1-C10alkylcarbonylamino, C1-C10 alkylaminocarbonyl, aryloxyC1-C10 alkoxy, aryloxyC1-C10alkylamino, aryloxyC1-C10 alkylamino carbonyl, C1-C10-alkylaminoalkylaminocarbonyl, C1-C10alkyl(N-alkyl)aminoalkyl-aminocarbonyl, alkylaminoalkylamino, alkylcarbonylaminoalkylamino, alkyl(N-alkyl)aminoalkylamino, (N-alkyl)alkylcarbonylaminoalkylamino, alkylaminoalkyl, alkylaminoalkylaminoalkyl, alkylpiperazinoalkyl, piperazinoalkyl, alkylpiperazino, alkenylaryloxyC1-C10 alkoxy, alkenylarylaminoC1-C10 alkoxy, alkenylaryllalkylamino C1-C10 alkoxy, alkenylaryloxyC1-C10 alkylamino, alkenylaryloxyC1-C10alkylaminocarbonyl, piperazinoalkylaryl, heteroarylC1-C10 alkyl, heteroarylC1-C10alkenyl, heteroarylC1-C10 alkynyl, heteroarylC1-C10 alkylamino, heteroarylC1-C10alkoxy, heteroaryloxyC1-C10alkyl, heteroaryloxyC1-C10 alkenyl, heteroaryloxyC2-C10 alkynyl, heteroaryloxyC1-C10alkylamino, and heteroaryloxyC1-C10 alkoxy;
- Cy1 is an optionally substituted aryl or optionally substituted heteroaryl;
- and,
- R40 is selected from:
- wherein, R41 is hydrogen, halogen, aliphatic, substituted aliphatic, aryl, substituted aryl, —OR20, —SR20, —NR20R21, —CF3, —CN, —NO2, —N3, —C(O)R20, —C(O)OR20, —C(O)NR20R21, acyl, alkoxy, substituted alkoxy, alkylamino, substituted alkylamino, dialkylamino, substituted dialkylamino, substituted or unsubstituted alkylthio, substituted or unsubstituted alkylsulfonyl.
A compound selected from Table 1A or a pharmaceutically acceptable salt, ester or prodrug thereof:
- TABLE 1A
- 1
- (4R,5R)-8-(cyclopent-1-en-1-yl)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-5-
- ((methyl(pyridin-3-ylmethyl)amino)methyl)-2,3,4,5-
- tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-dioxide
- 2
- 1-(4-fluorophenyl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 4
- N-(((4R,5R)-8-(cyclohexylethynyl)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-1,1-
- dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-yl)methyl)-N-methyl-2-
- (pyridin-4-yl)acetamide
- 6
- N-(((4R,5R)-2-((R)-1-hydroxypropan-2-yl)-4-methyl-8-(4-methylpent-1-yn-1-yl)-1,1-
- dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-yl)methyl)-N-methyl-2-
- (pyridin-3-yl)acetamide
- 7
- N-((2S,3S)-5-((R)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-3,4,5,6-tetrahydro-2H-benzo[b][1,5]oxazocin-10-
- yl)benzo[d]thiazole-2-carboxamide
- 8
- (4R,5R)-8-(cyclopropylethynyl)-2-((R)-1-hydroxypropan-2-yl)-4-methyl-5-
- ((methyl(pyridin-3-ylmethyl)amino)methyl)-2,3,4,5-
- tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-dioxide
- 9
- (4R,5S)-2-((R)-1-hydroxypropan-2-yl)-4-methyl-5-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-8-(p-tolyl)-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-
- dioxide
- 10
- (4S,5R)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-5-((methyl(pyridin-3-
- ylmethyl)amino)methyl)-8-(pent-1-yn-1-yl)-2,3,4,5-
- tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-dioxide
- 11
- N-(((4R,5S)-2-((R)-1-hydroxypropan-2-yl)-4-methyl-8-(4-methylpent-1-yn-1-yl)-1,1-
- dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-yl)methyl)-N-methyl-2-
- (pyridin-3-yl)acetamide
- 12
- (4R,5S)-8-(cyclohex-1-en-1-yl)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-5-
- ((methyl(pyridin-3-ylmethyl)amino)methyl)-2,3,4,5-
- tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-dioxide
- 13
- (4S,5S)-8-(cyclopent-1-en-1-yl)-2-((R)-1-hydroxypropan-2-yl)-4-methyl-5-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-2,3,4,5-
- tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-dioxide
- 14
- N-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-
- yl)cyclohexanecarboxamide
- 16
- (4S,5S)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-5-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-8-(o-tolyl)-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocine 1,1-
- dioxide
- 17
- (2S,3S)-5-((R)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyrimidin-5-
- ylmethyl)amino)methyl)-8-((E)-styryl)-4,5-dihydro-2H-pyrido[2,3-b][1,5]oxazocin-
- 6(3H)-one
- 18
- 4-(((((4R,5R)-8-(3-cyclopentylprop-1-yn-1-yl)-2-((R)-1-hydroxypropan-2-yl)-4-methyl-
- 1,1-dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-
- yl)methyl)(methyl)amino)methyl)benzoic acid
- 19
- N-(((4R,5R)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-8-(3-methylbut-1-yn-1-yl)-1,1-
- dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-yl)methyl)-N-
- methylnicotinamide
- 20
- N-(((4R,5R)-8-(cyclohex-1-en-1-yl)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-1,1-
- dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-yl)methyl)-N-methyl-2-
- (pyridin-3-yl)acetamide
- 21
- N-(((4S,5S)-2-((S)-1-hydroxypropan-2-yl)-4-methyl-8-(4-methylpent-1-yn-1-yl)-1,1-
- dioxido-2,3,4,5-tetrahydrobenzo[b][1,4,5]oxathiazocin-5-yl)methyl)-N-methyl-2-
- (pyridin-3-yl)acetamide
- 23
- 1-(4-bromophenyl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 24
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-(4-
- methoxyphenyl)urea
- 25
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-
- (pyridin-3-yl)urea
- 26
- 1-cyclopentyl-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 27
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-(2-
- morpholinopyridin-4-yl)urea
- 28
- 1-ethyl-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 29
- 1-(4-chlorophenyl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 30
- 1-(cyclohexylmethyl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 32
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-
- (naphthalen-1-yl)urea
- 34
- 1-(benzo[d][1,3]dioxo1-5-yl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 37
- N-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-
- yl)isonicotinamide
- 38
- 1-(2-fluorophenyl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 39
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-
- (1,2,3,4-tetrahydronaphthalen-1-yl)urea
- 40
- 1-(4-cyanophenyl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 41
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-(3-
- (pyrimidin-2-yl)phenyl)urea
- 42
- 1-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)-3-(2-
- (piperidin-1-yl)phenyl)urea
- 43
- 1-(benzofuran-5-yl)-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 44
- 1-cyclohexyl-3-((2R,3R)-2-((((3-fluoropyridin-4-yl)methyl)(methyl)amino)methyl)-5-
- ((S)-1-hydroxypropan-2-yl)-3-methyl-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 45
- 1-((2R,3R)-2-((((3-chloropyridin-4-yl)methyl)(methyl)amino)methyl)-5-((S)-1-
- hydroxypropan-2-yl)-3-methyl-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-
- yl)-3-cyclohexylurea
- 46
- 1-cyclohexyl-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(pyrimidin-
- 4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-
- yl)urea
- 47
- 1-cyclohexyl-3-((2R,3R)-5-((S)-1-hydroxypropan-2-yl)-3-methyl-2-((methyl(quinolin-
- 4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-
- yl)urea
- 48
- 1-((2R,3R)-2-((((1H-imidazol-2-yl)methyl)(methyl)amino)methyl)-5-((S)-1-
- hydroxypropan-2-yl)-3-methyl-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-
- yl)-3-cyclohexylurea
- 49
- 1-cyclohexyl-3-((2R,3R)-3-methyl-2-((methyl(pyridin-4-ylmethyl)amino)methyl)-6-
- oxo-5-((S)-1-(2-(pyrrolidin-1-yl)ethoxy)propan-2-yl)-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 50
- 1-cyclohexyl-3-((2R,3R)-5-((S)-1-((4-methoxybenzyl)oxy)propan-2-yl)-3-methyl-2-
- ((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 51
- 1-cyclohexyl-3-((2R,3R)-5-((S)-1-(4-(4-methoxyphenyl)-1H-1,2,3-triazol-1-yl)propan-
- 2-yl)-3-methyl-2-((methyl(pyridin-4-ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 52
- 1-cyclohexyl-3-((2R,3R)-5-isopropyl-3-methyl-2-((methyl(pyridin-4-
- ylmethyl)amino)methyl)-6-oxo-2,3,4,5,6,7-hexahydrobenzo[h][1,5]oxazonin-9-yl)urea
- 53
- 1-cyclohexyl-3-((2R,3R)-5-((S)-1-((4-methoxybenzyl)oxy)propan-2-yl)-3-methyl-2-
- ((methyl((3-methylpyridin-4-yl)methyl)amino)methyl)-6-oxo-2,3,4,5,6,7-
- hexahydrobenzo[h][1,5]oxazonin-9-yl)urea.
A method of treating a disease related to a defect in isocitrate dehydrogenase comprising the step of administering a compound of Formula I to a patient in need thereof:
- each n and m is independently 0, 1, 2 or 3;
- each p and q is independently 0, 1, 2, 3, 4, 5, 6 or 7;
- X1 is —C(O)N(RA)—, —C(S)N(RA)—, or —S(O)2N(RA)—;
- wherein RA is hydrogen, aliphatic, substituted aliphatic, heteroaryl, substituted heteroaryl, aryl or substituted aryl;
- X2 is —S——O—, —S(O)2—, —C(R20)(R21)— or —N(RB)—;
- wherein RB is hydrogen, aliphatic, substituted aliphatic, heteroaryl, substituted heteroaryl, aryl or substituted aryl;
- each R1 and R2 is independently hydrogen, halogen, aliphatic, substituted aliphatic, aryl or substituted aryl;
- each R10 is independently absent, hydrogen, halogen, —OR20, —SR20, —NR20R21, —CF3, —CN, —NO2, —N3, —C(O)OR20, —C(O)R20, —C(O)NR20R21, acyl, alkoxy, substituted alkoxy, alkylamino, substituted alkylamino, dialkylamino, substituted dialkylamino, substituted or unsubstituted alkylthio, substituted or unsubstituted alkylsulfonyl, aliphatic, substituted aliphatic, aryl or substituted aryl;
- alternatively two of R10 groups together with the atoms to which they are attached and any intervening atoms may form an additional optionally substituted, 3, 4, 5, 6 or 7 membered ring;
- wherein each R20 and R21 is independently hydrogen, halogen, aliphatic, substituted aliphatic, aryl or substituted aryl;
- each R11 is independently absent, hydrogen, halogen, —OR20, —SR20, —NR20R21, —CF3, —CN, —NO2, —N3, —C(O)OR20, —C(O)R20, —C(O)NR20R21, acyl, alkoxy, substituted alkoxy, alkylamino, substituted alkylamino, dialkylamino, substituted dialkylamino, substituted or unsubstituted alkylthio, substituted or unsubstituted alkylsulfonyl, aliphatic, substituted aliphatic, aryl or substituted aryl;
- alternatively two of R11 groups together with the atoms to which they are attached and any intervening atoms may form an additional optionally substituted, 3, 4, 5, 6 or 7 membered ring;
- and,
- Cy1 is an optionally substituted aryl or optionally substituted heteroaryl.
Dependencies are inferred from the claim text.