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US 2014/0213473 A1Published application
Application of reduced dyes in imaging
AssigneeLI-COR, Inc.
InventorsKousik Kundu, Nisha Padhye, William Volcheck
Life of this patent
Estimating the term…
Abstract
The present invention provides novel compounds and methods for hydrocyanines derived from near-infrared cyanine dyes, as reactive oxygen species probes in imaging. In certain embodiments, the present invention provides reduced dyes as substrates for ELISA and Western blots.
Claims25
A compound having Formula I:
- wherein
- each R1 is an independently selected alkyl group that is additionally substituted with from 0 to 1 R14 and from 0 to 1 -L-Y—Z;
- wherein the alkyl is optionally interrupted by at least
- R1a is either hydrogen or deuterium;
- each R2a and R2b is a member independently selected from the group consisting of alkyl, alkenyl, hydroxyalkyl, alkoxyalkyl, aminoalkyl, amidoalkyl, alkylthioalkyl, carboxyalkyl, alkoxycarbonylalkyl, or sulfonatoalkyl;
- wherein a carbon of the member is additionally substituted with from 0 to 1 -L-Y—Z;
- each R3, R4, R5, and R6 is a member independently selected from the group consisting of hydrogen, alkyl, alkenyl, halo, hydroxyl, alkoxy, amino, cyano, carboxyl, alkoxycarbonyl, amido, sulfonato, alkoxyalkyl, carboxyalkyl, alkoxycarbonylalkyl, and sulfonatoalkyl;
- wherein a carbon of the member is additionally substituted with from 0 to 1 -L-Y—Z;
- R8, R9, R10, R11 and R12 are each a member independently selected from the group consisting of hydrogen, alkyl, alkenyl, halo, alkoxy, sulfonato, hydroxyl, amino, carboxyl, alkoxycarbonyl, cyano, amido, thioacetyl, and -L-Y—Z;
- wherein at least one member selected from the group consisting of R8, R9, and R10 is halo;
- each R13 is a member independently selected from the group consisting of hydroxyl, amino, carboxyl, and alkoxycarbonyl;
- each R14 is a member independently selected from the group consisting of alkyl, alkenyl, halo, hydroxyl, alkoxy, amino, amido, amidoalkyl, cyano, cyanoalkyl, carboxyl, alkoxycarbonyl, amido, sulfonato, sulfonatoalkyl, thioacetyl, thioacetylalkyl, alkoxycarbonylalkyl, and alkoxyalkyl;
- wherein the alkyl or alkenyl is additionally substituted with from 0 to 1 R13 and from 0 to 1 -L-Y—Z;
- each L is an optional member independently selected from the group consisting of a bond, a C1-C20 alkylene, and a C1-C20 alkenylene;
- wherein the alkylene or alkenylene is optionally interrupted by at least one heteroatom;
- each Y is an optional member independently selected from the group consisting of a bond, —O—, —S—, —NH—, —NHC(O)—, —C(O)NH—, —NR15—, —NR15C(O)—, —C(O)NR15—, —N(Z)—, —N(Z)C(O)—, and —C(O)N(Z)—;
- each Z is independently selected from the group consisting of -L-R13 and -L-R16;
- or alternatively, —Y—Z is a member selected from the group consisting of —N(Z)2, —N(Z)C(O)Z, and —C(O)N(Z)2, and the two Z groups may optionally be linked to form a cycloalkynyl group;
- each R15 is a member independently selected from the group consisting of alkyl and alkoxycarbonylalkyl;
- wherein the alkyl is optionally interrupted by at least one heteroatom;
- each R16 is independently a member selected from the group consisting of activated acyl, acrylamido, optionally substituted alkylsulfonate ester, azido, optionally substituted arylsulfonate ester, optionally substituted amino, aziridino, boronato, cycloalkynyl, cycloalkynylcarbonyl, diazo, formyl, glycidyl, halo, haloacetamidyl, haloalkyl, haloplatinato, halotriazino, hydrazinyl, imido ester, isocyanato, isothiocyanato, maleimidyl, mercapto, phosphoramidityl, a photoactivatable moiety, vinyl sulfonyl, alkynyl, cycloalkynyl, spirocycloalkynyl, a pegylated azido, a pegylated alkynyl, a pegylated cycloalkynyl, a pegylated spirocycloalkynyl, an o-diarylphosphino aryl ester, and an ortho substituted phosphine oxide aryl ester;
- and
- wherein said compound has a balanced charge.
20 more elements
A compound of Formula II:
- wherein:
- R1 and R1a are each independently an alkyl group that is additionally substituted with from 0 to 1 R13, wherein the alkyl is optionally interrupted by at least one heteroatom;
- R1a′ and R1′ are each independently either hydrogen or deuterium;
- each R13 is independently a member independently selected from the group of hydroxyl, amino, carboxyl, alkoxycarbonyl, amido, sulfonato, and thioacetyl. In a preferred embodiment, R13 is carboxyl, amido, or alkoxycarbonyl;
- each R14 is a member independently selected from the group of alkyl, alkenyl, halo, hydrogen, hydroxyl, alkoxy, amino, cyano, carboxyl, alkoxycarbonyl, amido, sulfonato, alkoxycarbonylalkyl, and alkoxyalkyl;
- wherein the R14 alkyl is additionally substituted with from 0 to 1 R13;
- and wherein at least one R14 is sulfonato;
- L is an optional member selected from the group of a bond, a C1-C10 alkylene, and a C1-C10 alkenylene;
- wherein the alkylene or alkenylene is optionally interrupted by at least one heteroatom;
- Y is an optional member selected from the group of a bond, —O—, —S—, —NH—, —NHC(O)—, —C(O)NH—, —NR15—, —NR15C(O)—, —C(O)NR15—, —NZ—, —NZC(O)—, and —C(O)NZ—;
- each Z is an independently selected C1-C10 alkyl that is additionally substituted with one member from the group of R13 and R16;
- wherein the alkyl is optionally interrupted by at least one heteroatom.
- R15 is a member selected from the group of alkyl and alkoxycarbonylalkyl;
- wherein the alkyl is optionally interrupted by at least one heteroatom.
11 more elements
16-43. (canceled)
An assay method for measuring an analyte in a sample, the method comprising:
- a) contacting said sample with a binding reagent that binds to an analyte to form an analyte complex;
- b) contacting said sample with a compound of Formula I-VII, wherein said compound reacts with a substrate within close proximity to said analyte complex to form a detectable agent;
- and
- c) upon excitation, detecting said detectable agent.
1 more element
(canceled)
(canceled)
(canceled)
A method for detecting a reactive oxygen species, said method comprising:
- contacting a cell with one or more compounds of Formula I-II to form an oxidized form of said compound;
- and
- exciting the oxidized form of said compound to emit light.
52-55. (canceled)
Dependencies are inferred from the claim text.