# US 2014/0154760 A1 · 3-Hydroxypropionic Acid Production By Recombinant Yeasts

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- Number: US 2014/0154760 A1
- Document ID: US20140154760A1
- Status: Published application
- Kind: A1
- Application number: 14/089,219
- Filed: 2013-11-25
- Published: 2014-06-05
- Earliest claimed: 2012-11-30
- Assignees: Novozymes, Inc.
- Applicants: Novozymes, Inc.
- Inventors: Mariah Bindel
- Web page: https://patentgrep.com/patent/US20140154760A1

## CPC

- C12P 7/42: Hydroxy-carboxylic acids
- C12N 1/16: Yeasts; Culture media therefor
- C12N 9/0008: {acting on the aldehyde or oxo group of donors (1.2)}
- C12N 15/52: Genes encoding for enzymes or proenzymes
- C12Y 102/01009: Glyceraldehyde-3-phosphate dehydrogenase (NADP+) (1.2.1.9)
- Y02E 50/10: Biofuels, e.g. bio-diesel
- Y02P 20/52: using catalysts, e.g. selective catalysts
- C12P: FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE {(brewing of beer C12C; producing vinegar C12J; producing specific peptides or proteins C07K; producing enzymes C12N9/00; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification C12N15/00; measuring or testing processes involving enzymes or microorganisms C12Q; measuring or testing processes involving nucleic acid amplification reactions C12Q1/6844; fermentation processes to form a food composition, A21 or A23; compounds in general, see the relevant compound class, e.g. C01, C07)}
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)
- C12Y: ENZYMES
- Y02E: REDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION
- Y02P: CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS

## Abstract

Provided herein are recombinant yeast cells having an active 3-Hydroxypropionic Acid (3-HP) pathway and further comprising a heterologous polynucleotide encoding a non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN). Also described are methods of using the recombinant yeast cells to produce 3-HP and acrylic acid.

## Claims

### Claim 1

A recombinant yeast cell, comprising: (1) an active 3-HP pathway that proceeds through a β-alanine intermediate, and (2) a heterologous polynucleotide encoding a non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN), wherein the cell capable of producing 3-HP.

### Claim 2 (depends on 1)

The recombinant yeast cell of claim 1, wherein the cell comprises a heterologous polynucleotide encoding an ADC.

### Claim 3 (depends on 2)

The recombinant yeast cell of claim 2, wherein the ADC has at least 80% sequence identity to the amino acid sequence of SEQ ID NO: 17, 18, 133, 135, 137, or 139.

### Claim 4 (depends on 2)

The recombinant yeast cell of claim 2, wherein the ADC has an amino acid sequence comprising or consisting of SEQ ID NO: 17, 18, 133, 135, 137, or 139.

### Claim 5 (depends on 1)

The recombinant yeast cell of claim 1, wherein the non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN) has at least 80% sequence identity to the amino acid sequence of SEQ ID NO: 154, 155, 156, 157, 158, 159, 160, 161, 162, 189, 190, 192, or 194.

### Claim 6 (depends on 1)

The recombinant yeast cell of claim 1, wherein the non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN) has an amino acid sequence comprising or consisting of SEQ ID NO: 154, 155, 156, 157, 158, 159, 160, 161, 162, 189, 190, 192, or 194.

### Claim 7 (depends on 1)

The recombinant yeast cell of any of claim 1, wherein the heterologous polynucleotide encoding the non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN) comprises a promoter foreign to GAPN coding sequence.

### Claim 8 (depends on 1)

The recombinant yeast cell of claim 1, wherein the cell is capable of producing a greater amount of 3-HP compared to the cell without the heterologous polynucleotide encoding the non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN), when cultivated under identical conditions.

### Claim 9 (depends on 8)

The recombinant yeast cell of claim 8, wherein the cell is capable of producing at least 10% more 3-HP compared to the cell without the heterologous polynucleotide encoding the non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN), when cultivated under identical conditions.

### Claim 10 (depends on 1)

The recombinant yeast cell of claim 1, wherein said cell further comprises a disruption to one or more endogenous genes encoding a PDC, ADH, GALE, CYB2A, CYB2B, GPD, GPP, ALD, or PCK.

### Claim 11 (depends on 10)

The recombinant yeast cell of claim 10, wherein said cell further comprises a disruption to an endogenous gene encoding a PDC.

### Claim 12 (depends on 10)

The recombinant yeast cell of claim 10, wherein said cell further comprises a disruption to an endogenous gene encoding a GPD.

### Claim 13 (depends on 1)

The recombinant yeast cell of claim 1, wherein the yeast cell belongs to a genus selected from Issatchenkia, Candida, Kluyveromyces, Pichia, Schizosaccharomyces, Torulaspora, Zygosaccharomyces, and Saccharomyces.

### Claim 14 (depends on 13)

The recombinant yeast cell of claim 13, wherein the yeast cell belongs to a clade selected from the I. orientalis/P. fermentans clade and the Saccharomyces clade.

### Claim 15 (depends on 13)

The recombinant yeast cell of claim 13, wherein the yeast cell is selected from I. orientalis, C. lambica, and S. bulderi.

### Claim 16 (depends on 15)

The recombinant yeast cell of claim 15, wherein the yeast cell is an I. orientalis CNB1 yeast cell.

### Claim 17 (depends on 16)

The recombinant yeast cell of claim 16, wherein the yeast cell is unable to ferment pentose sugars.

### Claim 18 (depends on 1)

The recombinant yeast cell of claim 1, wherein the cell is capable of growing at a pH of less than 4 in media containing 75 g/L or greater 3-HP.

### Claim 19 (depends on 1)

The recombinant yeast cell of claim 1, wherein the cell is a 3-HP-resistant yeast cell.

### Claim 20 (depends on 1)

The recombinant yeast cell of claim 1, wherein the cell has undergone mutation and/or selection, such that the mutated and/or selected cell possess a higher degree of resistance to 3-HP than a wild-type cell of the same species.

### Claim 21 (depends on 20)

The recombinant yeast cell of claim 20, wherein the cell has undergone selection in the presence of lactic acid or 3-HP.

### Claim 22 (depends on 20)

The recombinant yeast cell of claim 20, wherein the selection is chemostat selection.

### Claim 23

A recombinant yeast cell, comprising (1) an active 3-HP pathway, and (2) a heterologous polynucleotide encoding a non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN), wherein the GAPN has:
(a) at least 80% sequence identity to the amino acid sequence of SEQ ID NO: 192; or
(b) at least 80% sequence identity to the amino acid sequence of SEQ ID NO: 194; and
wherein the cell is capable of producing 3-HP.

### Claim 24 (depends on 23)

The recombinant yeast cell of claim 23, wherein the non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN) has an amino acid sequence comprising or consisting of SEQ ID NO: 192 or 194.

### Claim 25 (depends on 1, 23)

A method of producing 3-HP, comprising:
(a) cultivating the recombinant yeast cell of claim 1 or claim 23 in a fermentable medium under suitable conditions to produce 3-HP; and
(b) recovering the 3-HP.

### Claim 26 (depends on 25)

The method of claim 25, wherein the fermentable medium comprises sucrose, glucose, and/or fructose.

### Claim 27 (depends on 25)

The method of claim 25, wherein the yeast cell is an I. orientalis CNB1 yeast cell and the fermentable medium comprises less than 1% pentose sugars.
