# US 2014/0154282 A1 · Conjugates utilizing platform technology for stimulating immune response

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- Number: US 2014/0154282 A1
- Document ID: US20140154282A1
- Status: Published application
- Kind: A1
- Application number: 13/981,300
- Filed: 2012-01-26
- Published: 2014-06-05
- Earliest claimed: 2011-01-26
- Inventors: Robert S. Hodges; Kathryn V. Holmes; Zhe Yan; Wendy Jeanne Hartsock; Zhaohui Qian; Brooke Elizabeth Bishop Hirsch
- Web page: https://patentgrep.com/patent/US20140154282A1

## CPC

- A61K 39/145: Orthomyxoviridae, e.g. influenza virus
- A61K 39/12: Viral antigens
- A61K 47/643: {Albumins, e.g. HSA, BSA, ovalbumin or a Keyhole Limpet Hemocyanin [KHL]}
- A61P 31/16: for influenza or rhinoviruses
- A61P 37/04: Immunostimulants
- A61K 2039/6081: {Albumin; Keyhole limpet haemocyanin [KLH]}
- A61K 2039/64: {characterised by the architecture of the carrier-antigen complex, e.g. repetition of carrier-antigen units}
- C12N 2760/16134: Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
- A61K: PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES (devices or methods specially adapted for bringing pharmaceutical products into particular physical or administering forms A61J3/00; chemical aspects of, or use of materials for deodorisation of air, for disinfection or sterilisation, or for bandages, dressings, absorbent pads or surgical articles A61L; soap compositions C11D)
- A61P: SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)

## Abstract

Templated conjugates created from naturally-occurring protein sequences found in pathogens, such as viruses, are disclosed. The sequences are “templated” into a consensus coiled-coil sequence in a platform in order to form a two-stranded antigen suitable for immunization of a subject.

## Claims

### Claim 1

A conjugate, comprising:
two templated alpha helical polypeptides of approximately equal length, wherein each polypeptide comprises at least two heptad repeats, and wherein the polypeptides are derived from at least one virus;
a covalent linkage between the two polypeptides; and
a carrier protein covalently linked to one of the polypeptides;
wherein the first polypeptide comprises the form:
[I-b1i-c1i-L-e1i-f1i-g1i]n,
where [I-b1i-c1i-L-e1i-f1i-g1i] is a pattern that repeats n times in the sequence of the first polypeptide, giving rise to at least two discrete seven-amino-acid segments,
where I in each segment is isoleucine,
L in each segment is leucine,
n is an integer of at least 2;
i is an integer from 1 to n, wherein the value of i is determined by the position of the segment in which it appears, such that the N-terminal segment which appears first in the sequence is assigned a value of i=1, i is incremented by one for each additional segment, and the C-terminal segment is assigned a value of i=n;
where each b, c, e, f, and g in each of the n segments is selected independently of each b, c, e, f, and g amino acid in all other segments of the first polypeptide, and of all segments of the second polypeptide;
the b, c, e, f, and g amino acids are selected from an epitope;
the second polypeptide comprises the form:
[I-b2i-c2i-L-e2i-f2i-g2i]n,
where [I-b2i-c2i-L-e2i-f2i-g2i] is a pattern that repeats n times in the sequence of the second polypeptide, giving rise to at least two discrete seven-amino-acid segments,
where I in each segment is isoleucine,
L in each segment is leucine,
n is an integer of at least 2 and is the same as n for the first polypeptide;
i is an integer from 1 to n, wherein the value of i is determined by the position of the segment in which it appears, such that the N-terminal segment which appears first in the sequence is assigned a value of i=1, i is incremented by one for each additional segment, and the C-terminal segment is assigned a value of i=n;
where each b, c, e, f, and g in each of the n segments is selected independently of each b, c, e, f, and g amino acid in all other segments of the second polypeptide, and of all segments of the first polypeptide;
the b, c, e, f, and g amino acids are selected from an epitope which is different from the epitope of the first polypeptide;
wherein the conjugate has the form:
[Carrier Moiety]-[Linker A]-[Linker B1]-[Templated Epitope 1]-[Epitope 1 Modifier]
[Modifier B2]-[Templated Epitope 2]-[Epitope 2 Modifier]
where Carrier Moiety, Linker A, Linker B 1, Modifier B2, Epitope 1 Modifier, and Epitope 2 Modifier are optionally present; and
optionally comprising an additional covalent Linker C between Templated Epitope 1 and Templated Epitope 2;
optionally comprising an additional covalent Linker D between Epitope 1 Modifier and Epitope 2 Modifier, or
optionally comprising an additional covalent Linker C between Templated Epitope 1 and Templated Epitope 2 and an additional covalent Linker D between Epitope 1 Modifier and Epitope 2 Modifier, wherein the Epitope 1 Modifier and the Epitope 2 Modifier are present and are selected from hydrophilic, polar, and charged amino acids, wherein the [Linker A] moiety is present, wherein the [Linker B1] moiety is present;
with the proviso that either both Epitope 1 Modifier and Epitope 2 Modifier are present, or Linker C is present, or Linker D is present.

### Claim 2 (depends on 1)

The conjugate of claim 1, wherein Templated Epitope 1 and Templated Epitope 2 are derived from two different epitope sequences chosen from the same strain of the same virus.

### Claim 3 (depends on 1)

The conjugate of claim 1, wherein the epitope sequence from which Templated Epitope 1 is derived is chosen from a strain of a virus, and the epitope sequence from which Templated Epitope 2 is chosen is from the same epitope in a different strain of the same virus.

### Claim 4 (depends on 1)

The conjugate of claim 1, wherein the epitope sequence from which Templated Epitope 1 is derived is chosen from a strain of a virus, and the epitope sequence from which Templated Epitope 2 is chosen is from a different epitope in a different strain of the same virus.

### Claim 5 (depends on 1)

The conjugate of claim 1, wherein the epitope sequence from which Templated Epitope 1 is derived is chosen from a virus, and the epitope sequence from which Templated Epitope 2 is chosen is from a different virus.

### Claim 6 (depends on 1)

The conjugate of claim 1, wherein the virus is an influenza virus.

### Claim 7 (depends on 5)

The conjugate of claim 5, wherein one of Templated Epitope 1 and Templated Epitope 2 is derived from a sequence chosen from an influenza virus, and the other of Templated Epitope 1 and Templated Epitope 2 is derived from a sequence chosen from a virus other than influenza virus.

### Claim 8 (depends on 2)

The conjugate of claim 2, wherein Templated Epitope 1 is
Influenza PR8HA2 5P(420-448) Templated Epitope 5P (IENLNKKIDDLFLDIWTLNAEILVLENCRR-amide (SEQ ID NO: )) and
Templated Epitope 2 is Influenza PR8HA2 6P(448-476) Templated Epitope 6P (IRTLDFHISNLKNLIEKLKSQIKNLAKECRR-amide (SEQ ID NO: )).

### Claim 9 (depends on 8)

The conjugate of claim 8 of the form:
wherein KLH is keyhole limpet hemocyanin, Nle is norleucine, and the vertical bar | between each C residue in each strand indicates a cystine disulfide bond.

### Claim 10 (depends on 8)

The conjugate of claim 8 of the form:
wherein KLH is keyhole limpet hemocyanin, Nle is norleucine, and the vertical bar | between each C residue in each strand indicates a cystine disulfide bond.

### Claim 11 (depends on 1)

The conjugate of claim 1, wherein the carrier moiety is selected from a protein, keyhole limpet hemocyanin (KLH), bovine serum albumin (BSA), ovalbumin, tetanus toxoid, cholera subunit B, protein D from H. influenza, diphtheria toxoid, a promiscuous T-cell peptide epitope, a promiscuous human measles T cell peptide epitope, the peptide KLLSLIKGVIVHRLEGVE (SEQ ID NO: ), a non-proteinaceous moiety, a polysaccharide, or alginic acid (alginate).

### Claim 12 (depends on 1)

The conjugate of claim 1, wherein the linkage between the carrier moiety and Linker A (if present), Linker B1 (if present in the absence of Linker A), or Templated Epitope 1 (if Linker A and Linker B1 are absent) is chemically definite.

### Claim 13 (depends on 1)

A method of generating a protective immune response in a subject in need thereof, comprising administering the conjugate of claim 1 to a subject in a sufficient amount to produce the protective immune response.

### Claim 14 (depends on 1)

A method of inducing an antibody response in an individual in need thereof, the method comprising administering the conjugate of claim 1 to an individual in need thereof in an amount sufficient to induce an antibody response in the individual.

### Claim 15 (depends on 14)

The method of claim 14 wherein the antibody response is the production of a neutralizing antibody.

### Claim 16 (depends on 1)

A method of generating a protective immune response in a subject in need thereof, comprising administering the conjugate of claim 1 to a subject in a sufficient amount to produce the protective immune response.

### Claim 17 (depends on 1)

A method of inducing an antibody response in an individual in need thereof, the method comprising administering the conjugate of claim 1 to an individual in need thereof in an amount sufficient to induce an antibody response in the individual.

### Claim 18 (depends on 17)

The method of claim 17 wherein the antibody response is the production of a neutralizing antibody.
