Method and System for Accurate Construction Of Long Range Haplotype

A computer-readable medium including instructions that, when executed by a processing unit, cause the processing unit to interpret genetic data, by performing the steps of:

• receiving genetic data for at least two individuals;
• analyzing the received genetic data;
• implementing a model, wherein the model implements a simplified emission distribution, has no divergence time variable, and does not implement Bayesian priors;
• determining a local recombination rate based on the model;
• determining a mutation rate based on the model;
• determining a long range haplotype based on the local recombination rate and the mutation rate.

A computing device comprising:

• a data bus;
• a memory unit coupled to the data bus;
• a processing unit coupled to the data bus and configured to
• receive genetic data for at least two individuals;
• analyze the received genetic data;
• implement a model, wherein the model implements a simplified emission distribution, has no divergence time variable, and does not implement Bayesian priors;
• determine a local recombination rate based on the model;
• determine a mutation rate based on the model;
• determine a long range haplotype based on the local recombination rate and the mutation rate.