Method of Constructing a Data Structure
AssigneeThe Procter & Gamble Company
InventorsTomohiro HAKOZAKI, Wenzhu ZHAO, Robert Lloyd BINDER, Jun XU
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Abstract
A method of constructing a data architecture for use in identifying connections between perturbagens and genes associated with skin tone. The method includes providing a gene expression profile for a control cell, generating a gene expression profile for a cell exposed to a perturbagen, identifying genes differentially expressed in response to the perturbagen, creating an ordered list of identifiers, storing the ordered list as an instance on a computer readable medium, and constructing a data architecture of stored instances.
Claims20
A method of constructing a data architecture for use in identifying connections between perturbagens and genes associated with skin tone, comprising:
- (a) providing a gene expression profile for a control human cell, wherein the control cell is from a human cell line selected from the group consisting of keratinocyte, fibroblast, melanocyte and melanoma cell lines;
- (b) generating a gene expression profile for a human cell exposed to at least one perturbagen, wherein the cell is selected from the same cell line as the control cell;
- (c) identifying genes differentially expressed in response to the at least one perturbagen by comparing the gene expression profiles of (a) and (b);
- (d) creating an ordered list comprising identifiers representing the differentially expressed genes, wherein the identifiers are ordered according to the differential expression of the genes;
- (e) storing the ordered list as an instance on a computer readable medium, wherein the instance is a keratinocyte, fibroblast, melanocyte or melanoma instance according to the selection in (a);
- and
- (f) constructing a data architecture of stored instances by repeating (a) through (e), wherein the at least one perturbagen of step (b) is different qualitatively or quantitatively for each instance.
Dependencies are inferred from the claim text.