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US 2013/0260460 A1Published application
Conformationally restricted dinucleotide monomers and oligonucleotides
AssigneeIsis Pharmaceuticals, Inc.
InventorsJeremy Lackey, Muthiah Manoharan, Kallanthottathil Rajeev, Ivan Zlatev, Eric E. Swayze, Thazha P. Prakash
Life of this patent
Estimating the term…
Abstract
This invention relates to conformationally locked dinucleotide motifs for exo- and phosphate stabilization. For instance, oligonucleotides can be prepared having one or more of the following formulas (IV-IX).
Claims33
-16. (canceled)
An oligonucleotide comprising at least one monomer of formula (V):
- or isomers thereof,
- wherein:
- each B is independently H or a nucleobase;
- each R is independently for each occurrence H, halo, OR3, O—(CH2)l—R4, O(CH2CH2O)mCH2CH2OR3, OCH2CH2OCH3, NH2, alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, amino acid, NH(CH2CH2NH)nCH2CH2—R4, NHC(O)R3, cyano, mercapto, alkyl-thio-alkyl, thioalkoxy, alkyl, cycloalkyl, aryl, heteroaryl, alkenyl, or alkynyl, each of which may be optionally substituted;
- Q is independently for each occurrence CH2, —C(R6)═C(R6)—, —C≡C—, —N═CH—, —CH═N—, —O—, —S—, —S—S—, —N(R′)—C(Z)—, —C(Z)—N(R′)—, —N(R′)—C(Z)—O—, —O—C(Z)—N(R′)—, —C(O)N(R′)—N═C(R6)—;
- —N(R′)—N═C(R6)—;
- —O—N═C(R6)—, —C(R6)═N—O—, —C(R6)═N—N(R′)C(O)—, —C(R6)═N—N(R′)—, —C(R6)═N—N(R′)—O—, —O—N(R′)—N═C(R6)—,
- each R3 is independently for each occurrence H, alkyl, cycloalkyl, heterocycly, aryl, aralkyl, heteroaryl, sugar, or R4;
- each R4 is independently for each occurrence NH2, alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino;
- R6 is H, alkyl, ω-amino alkyl, ω-hydroxy alkyl, aryl, heterocyclic, or aralkyl;
- R7 is H or
- X, X2, X3, X4 and X5 are each independently for each occurrence H, O−, OR5, S−, SR5, N(R′)(R″), B(R5)3, BH3−, or Se;
- Y, Y2, Y3, Y4 and Y5 are each independently for each occurrence O or S,
- Z and Z4 are independently for each occurrence O, S, or N(R′)(R″);
- Z5 is independently for each occurrence O, S, CH2, NR′;
- R5 is independently for each occurrence H, alkyl, cycloalkyl, heterocycly, aryl, aralkyl, or heteroaryl;
- R′ and R″ are independently for each occurrence H, alkyl, aryl, ω-amino alkyl, ω-hydroxy alkyl, ω-hydroxy alkenyl, alkynyl, cyclic alkyl, heterocyclic, aryl, or heteroaryl;
- l is independently for each occurrence 1-6;
- m is independently for each occurrence 0-50;
- n is independently for each occurrence 0-50;
- p is independently for each occurrence 0, 1, 2, 3, 4, 5, or 6;
- q is independently for each occurrence 0, 1, 2, 3, 4, 5, or 6;
- and
- r is 0, 1 or 2.
21 more elements
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-30. (canceled)
(canceled)
-49. (canceled)
(canceled)
Dependencies are inferred from the claim text.