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US 2012/0270215 A1Published application
Probe for detecting polymorphism in cyp3a gene, method of detecting polymorphism, method of evaluating drug efficacy, and reagent kit for detecting polymorphism
AssigneeARKRAY, Inc.
InventorsAki Iguchi, Mitsuharu Hirai
Life of this patent
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Abstract
Provided in the present disclosure is a probe for detecting polymorphism that enables a simple detection of polymorphism in the CYP3A gene with high sensitivity.
Claims22
A probe comprising one oligonucleotide selected from the group consisting of oligonucleotides P1, P1′, P2, P2′, P3, P3′, P4, P4′, P5, and P5′, wherein
- P1 is an oligonucleotide having a sequence including the 401st to the 411th bases of SEQ ID NO:
- 1 and having a length of from 11 bases to 50 bases, the sequence having at least 85% identity to the 401st to the 411th bases of SEQ ID NO:
- 1 with the exception that the base corresponding to the 411th base in SEQ ID NO:
- 1 is cytosine411th;
- P1′ is an oligonucleotide having a sequence including the 401st to the 411th bases of SEQ ID NO:
- 1 and having a length of from 11 bases to 50 bases, the sequence being hybridized under stringent conditions to a complementary strand of the 401st to the 411th bases of SEQ ID NO:
- 1 with the exception that the base corresponding to the 411th base in SEQ ID NO:
- 1 is cytosine411th;
- P2 is an oligonucleotide having a sequence including the 201st to the 205th bases of SEQ ID NO:
- 2 and having a length of from 5 bases to 50 bases, the sequence having at least 85% identity to the 201st to the 205th bases of SEQ ID NO:
- 2 with the exception that the base corresponding to the 205th base in SEQ ID NO:
- 2 is cytosine;
- P2′ is an oligonucleotide having a sequence including the 201st to the 205th bases of SEQ ID NO:
- 2 and having a length of from 5 bases to 50 bases, the sequence being hybridized under stringent conditions to a complementary strand of the 201st to the 205th bases of SEQ ID NO:
- 2 with the exception that the base corresponding to the 205th base in SEQ ID NO:
- 2 is cytosine;
- P3 is an oligonucleotide having a sequence complementary to a sequence including the 190th to the 201st bases of SEQ ID NO:
- 2 and having a length of from 12 bases to 50 bases, the sequence having at least 85% identity to the 190th to the 201st bases of a complementary strand of SEQ ID NO:
- 2 with the exception that the base complementary to the 190th base in SEQ ID NO:
- 2 is cytosine;
- P3′ is an oligonucleotide having a sequence complementary to a sequence including the 190th to the 201st bases of SEQ ID NO:
- 2 and having a length of from 12 bases to 50 bases, the sequence being hybridized under stringent conditions to the 190th to the 201st bases of SEQ ID NO:
- 2 with the exception that the base complementary to the 190th base in SEQ ID NO:
- 2 is cytosine;
- P4 is an oligonucleotide having a sequence complementary to a sequence including the 186th to the 201st bases of SEQ ID NO:
- 2 and having a length of from 16 bases to 50 bases, the sequence having at least 85% identity to the 186th to the 201st bases of a complementary strand of SEQ ID NO:
- 2 with the exception that the base complementary to the 186th base in SEQ ID NO:
- 2 is cytosine;
- P4′ is an oligonucleotide having a sequence complementary to a sequence including the 186th to the 201st bases of SEQ ID NO:
- 2 and having a length of from 16 bases to 50 bases, the sequence being hybridized under stringent conditions to the 186th to the 201st bases of SEQ ID NO:
- 2 with the exception that the base complementary to the 186th base in SEQ ID NO:
- 2 is cytosine;
- P5 is an oligonucleotide having a sequence complementary to a sequence including the 496th to the 501st bases of SEQ ID NO:
- 3 and having a length of from 6 bases to 50 bases, the sequence having at least 85% identity to the 496th to the 501st bases of a complementary strand of SEQ ID NO:
- 3 with the exception that the base complementary to the 496th base in SEQ ID NO:
- 3 is cytosine;
- and
- P5′ is an oligonucleotide having a sequence complementary to a sequence including the 496th to the 501st bases of SEQ ID NO:
- 3 and having a length of from 6 bases to 50 bases, the sequence being hybridized under stringent conditions to the 496th to the 501st bases of SEQ ID NO:
- 3 with the exception that the base complementary to the 496th base in SEQ ID NO:
- 3 is cytosine.
38 more elements
Dependencies are inferred from the claim text.