Alpha helical mimics, their uses and methods for their production
AssigneeThe University of Queensland
InventorsDavid P. Fairlie, Nicholas E. Shepherd
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Abstract
Disclosed are short chain peptides that are constrained to adopt an alpha helicial conformation and their use as alpha helical scaffolds for directing amino acid side chains into positions analogous to those found in longer chain alpha helical peptides. Also disclosed is the use of these peptides for attaching peptidic or non-peptidic appendages in order to mimic side chains of longer alpha helical peptides. The peptides find use in mimicking naturally occurring peptides or proteins or in preparing new materials.
Claims35
A compound having the formula (I):
- wherein the Xaa are L-alpha amino acid residues, 2 or 3 of which are favorable to alpha helix formation;
- or
- wherein the Xaa are D-alpha amino acid residues, 2 or 3 of which are favorable to alpha helix formation;
- wherein the amino acid residues that are favorable to alpha helix formation are selected from alanine, arginine, lysine, methionine, leucine, glutamic acid, glutamine, cysteine, isoleucine, phenylalanine, tryptophan, histidine and aspartic acid;
- wherein the compound has at least three (1,5) intramolecular hydrogen bonds;
- R1 is selected from an N-terminal capping group, a non-peptidic group or a group that mimics an amino acid side chain, an amino acid residue optionally capped by an N-terminal capping group, a non-peptidic group or a group that mimics an amino acid side chain;
- R2 is selected from a C-terminal capping group, a group that mimics an amino acid side chain or a group that activates the terminal carboxylic acid carbonyl group to nucleophilic substitution, an amino acid residue optionally capped by a C-terminal capping group, a group that mimics an amino acid side chain or a group that activates the terminal carboxylic acid carbonyl group to nucleophilic substitution;
- each R9 and R0 are independently selected from H, C1-C10alkyl, C2-C1-C10alkenyl, C2-C10alkynyl, C3-C10cylcoalkyl, C5-C10cycloalkenyl, —OH, —OC1-C10alkyl, —NH2, —NH(C1-C10alkyl), —N(C1-C10alkyl)2, C6-C12 zaryl, C3-C10heterocyclyl, C5-C10heteroaryl and halo;
- L is selected from —NH—C(O)—, —C(O)—NH—, —S—S—, —CH(OH)CH2—, CH2CH(OH)—, —CH═CH—, —CH2—CH2—, —NH—CH2— —CH2—NH—, —CH2—S—, —S—CH2—, —C(O)—CH2—, —CH2—C(O)—, —S(O)t—NH-—NH—S(O)t—, CH2—P(═O)(OH)— and —P(═O)(OH)—CH2—;
- mis 4,
- n is 1, and
- t is 0, 1 or 2.
A method for constructing a constrained helical peptide, the method comprising:
- (1) synthesizing a peptide that comprises a sequence of five amino acid residues having a first terminal residue and a second terminal residue that are separated by an intervening sequence of three amino acid residues, and wherein the individual side chains of the first and second terminal residues are linkable to each other;
- and (2) cyclizing the peptide by linking the side chain of the first terminal residue with the side chain of the second terminal residue, thereby yielding an alpha helical cyclic peptide, wherein 2 or 3 of the three amino acid residues in the intervening sequence are D- or L-alpha amino acid residues and are selected on the basis that they are favorable to alpha helix formation and wherein the alpha helical peptide so constructed has at least three (1,5) intramolecular hydrogen bonds.
A method of producing a mimic of an alpha helical binding determinant, comprising:
- providing a protein of interest that comprises an alpha helical domain that interacts with a ligand;
- identifying a candidate binding determinant situated within a sequence of 3 or more contiguous amino acid residues in the alpha helical binding domain;
- selecting a first residue and a second residue in the sequence (designated i and i+4), which are separated by an intervening sequence of 3 amino acid residues, and which do not do not interact substantially with the ligand, for linkage to each other, wherein 2 or 3 of the amino acid residues in the intervening sequence are selected on the basis that they are favorable to alpha helix formation;
- and synthesizing a peptide that comprises the first and second residues and the intervening sequence and linking the side chains of the first and second residues, wherein the peptide so synthesized has at least three (1,5) intramolecular hydrogen bonds.
Dependencies are inferred from the claim text.