Method for the urinary detection of bladder cancer
AssigneeArray Genomics
InventorsOlivier Cussenot, Ian Jones, Neil Metters, François Lozach
Life of this patent
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Abstract
The invention relates to the diagnosis of bladder cancer and more specifically to the detection in urine samples of bladder carcinomas of the transitional type. The detection method according to the present invention enables, through the utilization of a DNA chip designed for this purpose, to determine the grade of the detected tumors.
Claims15
A method for in-vitro detection of bladder cancer in a patient, characterized in that it comprises the steps of:
- (i) extracting the DNA contained in a urine sample taken from said patient;
- (ii) fragmenting the DNA extracted in step (i);
- (iii) marking the obtained DNA fragments uniformly with a marking agent so as to form a pool of marked DNA;
- (iv) forming at least one aliquot from the pool of marked DNA and bringing each aliquot into contact with a set of reference DNAs, said contact being carried out under conditions enabling specific hybridization of the marked DNA fragments with said reference DNAs;
- said reference DNAs comprising DNA sequences included in each of the following loci present in the human chromosomes:
- 1p, 3q, 8q22qter, 20, 5p12-p13, 9p, 9q, 18q12, 1q22-q24, 5p, 6q22, 7, 11q13, 12q15, 13q, 15, 16, 17q, 6q25-q27, 7q, 8p, 10q, 11p, 14q22-qter, 17p, 19 and 22;
- (v) eliminating the marked DNA fragments which are not specifically hybridized to the reference DNAs;
- (vi) determining the intensity of the signal produced by the marked fragments hybridized to each of the selected reference DNAs;
- (vii) determining, for each reference DNA, the deviations between the signals obtained in comparison with those obtained with a control DNA from a healthy patient;
- (viii) deriving the patient's cancer stage from said observed deviations.
A DNA microarray for the detection of bladder cancer, characterized in that it comprises on its surface between 10 and 1000 reference DNA deposits, said reference DNAs comprising sequences included in every of the loci of human chromosomes:
- 1p, 3q, 8q22qter, 20, 5p12-p13, 9p, 9q, 18q12, 1q22-q24, 5p, 6q22, 7, 11q13, 12q15, 13q, 15, 16, 17q, 6q25-q27, 7q, 8p, 10q, 11p, 14q22-qter, 17p, 19 and 22.
Dependencies are inferred from the claim text.