Compounds, compositions, and methods for control of hepatitis c viral infections
AssigneeApath, LLC
InventorsUrszula Slomczynska, Paul Olivo, Jodi Beattie, Gale Starkey, Amine Noueiry, Robert Roth
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Abstract
Various tetrahydropyrazolo[1,5-a]pyrimidine compounds, compositions, methods of making, and methods for the prevention and treatment of HCV infections and associated diseases are disclosed. The invention further relates to biomarkers for identification of HCV strains which are resistant to the tetrahydropyrazolo[1,5-a]pyrimidine compounds.
Claims36
A method of treating or preventing a hepatitis C viral infection in a subject in need thereof, said method comprising administering to said subject a therapeutically effective amount of an enantiomer that inhibits hepatitis C viral replication having the formula (I):
- or a pharmaceutically acceptable salt thereof, wherein:
- R1 is selected from the group consisting of substituted aryl, unsubstituted aryl-substituted heteroaryl, unsubstituted heteroaryl, polyhaloalkyl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, substituted arylalkyl, unsubstituted arylalkyl, substituted heteroarylalkyl, and unsubstituted heteroarylalkyl groups;
- R2 is selected from the group consisting of polyhaloalkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted arylalkyl, unsubstituted arylalkyl, substituted heteroarylalkyl, and unsubstituted heteroarylalkyl groups;
- R3 is selected from the group consisting of substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted alkyl, unsubstituted alkyl, cycloalkyl, substituted arylalkyl, unsubstituted arylalkyl, heteroalkyl, alkoxy, alkyl thio, aryloxy, hydrogen, amino, —COOH, —CO—NH2, —CO—O—R″3, —CO—S—R″3, and —CO—NR′3-R″3 groups, wherein R′3 is a hydrogen, alkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl or unsubstituted heteroaryl group, and wherein R″3 is substituted aryl, unsubstituted aryl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, or —(X)—R, wherein X is a —(CH2)n— or —CO— linker group, wherein n is 1, 2, or 3, and wherein R is a substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, unsubstituted arylalkyl, substituted arylalkyl, or heteroalkyl group;
- R4 is selected from the group consisting of hydrogen, alkyl, cyano (CN), hydroxyl, nitro, chloro, bromo, fluoro, iodo, —COOH, —CO—NH2, —CO—O—R″4, —CO—S—R″4, and —CO—NR′4-R″4 groups, wherein R′4 is a hydrogen, substituted alkyl, unsubstituted alkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl or unsubstituted heteroaryl group, and wherein R″4 is —(X)—R, wherein X is a —(CH2)n— or —CO— linker group, wherein n is 1, 2, or 3, and wherein R is a substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, adamantyl, alkyl, cycloalkyl, unsubstituted arylalkyl, substituted arylalkyl, or heteroalkyl group;
- and wherein said compound or salt thereof is an enantiomer with R1 and R2 in a syn configuration that inhibits hepatitis C viral replication,
- thereby treating or preventing said hepatitis C viral infection in said subject.
3-4. (canceled)
7-12. (canceled)
14-25. (canceled)
27-31. (canceled)
A compound of the formula (I):
- or a pharmaceutically acceptable salt thereof, wherein:
- R1 is selected from the group consisting of substituted aryl, unsubstituted aryl substituted heteroaryl, unsubstituted heteroaryl, polyhaloalkyl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, substituted arylalkyl, unsubstituted arylalkyl, substituted heteroarylalkyl, and unsubstituted heteroarylalkyl groups;
- R2 is selected from the group consisting of polyhaloalkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted arylalkyl, unsubstituted arylalkyl, substituted heteroarylalkyl, and unsubstituted heteroarylalkyl groups;
- R3 is selected from the group consisting of substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted alkyl, unsubstituted alkyl, cycloalkyl, substituted arylalkyl, unsubstituted arylalkyl, heteroalkyl, alkoxy, alkyl thio, aryloxy, hydrogen, amino, —COOH, —CO—NH2, —CO—O—R″3, —CO—S—R″3, and —CO—NR′3-R″3 groups, wherein R′3 is a hydrogen, alkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl or unsubstituted heteroaryl group, and wherein R″3 is substituted aryl, unsubstituted aryl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, or —(X)—R, wherein X is a —(CH2)n— or —CO— linker group, wherein n is 1, 2, or 3, and wherein R is a substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, unsubstituted arylalkyl, substituted arylalkyl, or heteroalkyl group;
- R4 is selected from the group consisting of hydrogen, alkyl, cyano (CN), hydroxyl, nitro, chloro, bromo, fluoro, iodo, —COOH, —CO—NH2, —CO—O—R″4, —CO—S—R″4, and —CO—NR′4-R″4 groups, wherein R′4 is a hydrogen, substituted alkyl, unsubstituted alkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl or unsubstituted heteroaryl group, and wherein R″4 is —(X)—R, wherein X is a —(CH2)n— or —CO— linker group, wherein n is 1, 2, or 3, and wherein R is a substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, adamantyl, alkyl, cycloalkyl, unsubstituted arylalkyl, substituted arylalkyl, or heteroalkyl group;
- and wherein said compound or salt thereof is an enantiomer with R1 and R2 in a syn configuration that inhibits hepatitis C viral replication, said enantiomer being substantially free of other enantiomeric forms.
33-64. (canceled)
An enantiomer being substantially free of other enantiomeric forms, of the formula:
- or a pharmaceutically acceptable salt thereof, wherein:
- R1 is unsubstituted thienyl-2, substituted thienyl-2, unsubstituted furyl-2, or substituted furyl-2;
- R2 is a polyhaloalkyl selected from the group consisting of —CCl3, —CBr3, —CF3, —CF2Cl, —CF2Br, —CF2I, —CCl2F, and —CBr2F;
- R3 is —CO—NH2 or R3 is —CO—NHR′3-R″3, wherein R′3 is hydrogen and R″3 is -phenyl-m-(CHOH)—CH3, furan-2-yl-methyl, substituted furan-2-yl-methyl, thiophene-2-yl-methyl, or substituted thiophene-2-yl-methyl;
- and R4 is hydrogen, chlorine, or bromine.
67-78. (canceled)
80-84. (canceled)
A pharmaceutical composition comprising (a) a compound of the formula (I):
- or a pharmaceutically acceptable salt thereof, wherein:
- R1 is selected from the group consisting of substituted aryl, unsubstituted aryl-substituted heteroaryl, unsubstituted heteroaryl, polyhaloalkyl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, substituted arylalkyl, unsubstituted arylalkyl, substituted heteroarylalkyl, and unsubstituted heteroarylalkyl groups;
- R2 is selected from the group consisting of polyhaloalkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted arylalkyl, unsubstituted arylalkyl, substituted heteroarylalkyl, and unsubstituted heteroarylalkyl groups;
- R3 is selected from the group consisting of substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted alkyl, unsubstituted alkyl, cycloalkyl, substituted arylalkyl, unsubstituted arylalkyl, heteroalkyl, alkoxy, alkyl thio, aryloxy, hydrogen, amino, —COOH, —CO—NH2, —CO—O—R″3, —CO—S—R″3, and —CO—NR′3-R″3 groups, wherein R′3 is a hydrogen, alkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl or unsubstituted heteroaryl group, and wherein R″3 is substituted aryl, unsubstituted aryl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, or —(X)—R, wherein X is a —(CH2)n— or —CO— linker group, wherein n is 1, 2, or 3, and wherein R is a substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, substituted alkyl, unsubstituted alkyl, substituted cycloalkyl, unsubstituted cycloalkyl, unsubstituted arylalkyl, substituted arylalkyl, or heteroalkyl group;
- R4 is selected from the group consisting of hydrogen, alkyl, cyano (CN), hydroxyl, nitro, chloro, bromo, fluoro, iodo, —COOH, —CO—NH2, —CO—O—R″4, —CO—S—R″4, and —CO—NR′4-R″4 groups, wherein R′4 is a hydrogen, substituted alkyl, unsubstituted alkyl, substituted aryl, unsubstituted aryl, substituted heteroaryl or unsubstituted heteroaryl group, and wherein R″4 is —(X)—R, wherein X is a —(CH2)n— or —CO— linker group, wherein n is 1, 2, or 3, and wherein R is a substituted aryl, unsubstituted aryl, substituted heteroaryl, unsubstituted heteroaryl, adamantyl, alkyl, cycloalkyl, unsubstituted arylalkyl, substituted arylalkyl, or heteroalkyl group;
- and wherein said compound or salt thereof is an enantiomer with R1 and R2 in a syn configuration that inhibits hepatitis C viral replication, said enantiomer being substantially free of other enantiomeric forms;
- and
- (b) one or more pharmaceutically acceptable carriers.
87-94. (canceled)
96-98. (canceled)
100-104. (canceled)
107-128. (canceled)
An isolated nucleic acid comprising at least 15 nucleotides that encodes a mutant hepatitis C virus NS4B peptide sequence that comprises an amino acid residue other than phenylalanine at a position corresponding to amino acid residue 1809 of an HCV polyprotein reference sequence of SEQ ID NO:9.
130-131. (canceled)
(canceled)
A method for detecting a hepatitis C virus (HCV) that is resistant to a 4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine compound, comprising the step of determining an allelic state of a codon in said HCV that encodes an amino acid corresponding to amino acid residue 1809 of an HCV polyprotein reference sequence of SEQ ID NO:9, thereby detecting a hepatitis C virus that is resistant to a 4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine carboxamide compound.
(canceled)
(canceled)
Dependencies are inferred from the claim text.