Gene associated with liver cancer, and method for determination of the risk of acquiring liver cancer
AssigneeThe University of Tokyo
InventorsTakeaki Ishizawa, Norihiro Kokudo, Hirohide Yoshikawa, Yuko Shikauchi, Yaeko Murase
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Abstract
Provided are a method for detecting early-stage liver cancer and determining a risk of liver cancer by using blood collected from a patient with imposing a less burden on the patient; and a gene marker, a probe, a primer, and a reagent kit that can be used in the detection. A marker for diagnosis of acquiring liver cancer includes a polynucleotide that can detect all of the following methylated genes and a gene region: (1) human SALL3c gene, (2) human ECEL1 gene, and (3) SEQ ID NO: 6 (NT_037622.5, 1393863-1395863).
Claims22
1-10. (canceled)
A method for determining a presence or absence of a genetic factor of liver cancer, comprising detecting a methylation of a gene or gene region selected from the group consisting of SALL3c gene (SEQ ID NO:1), ECEL1 gene (SEQ ID NO:2), FOXC1 gene (SEQ ID NO:3), NRG3 gene (SEQ ID NO:4), KCNIP2 gene (SEQ ID NO:5), gene region SEQ ID NO:6, and gene region SEQ ID NO:7.
A method of selecting a candidate liver cancer therapeutic agent, comprising:
- selecting an agent;
- culturing a mammalian cell in the presence of the agent;
- culturing the mammalian cell in the absence of the agent;
- detecting a methylation of a gene or gene region selected from the group consisting of SALL3c gene (SEQ ID NO:1), ECEL1 gene (SEQ ID NO:2), FOXC1 gene (SEQ ID NO:3), NRG3 gene (SEQ ID NO:4), KCNIP2 gene (SEQ ID NO:5), gene region SEQ ID NO:6, and gene region SEQ ID NO:7;
- and,
- determining whether the agent at least suppresses the methylation of the gene or gene region;
- wherein, the agent is a candidate liver cancer therapeutic agent, where the agent at least suppresses the methylation.
A method of detecting the presence or absence of microscopic vascular invasion in liver cancer of a subject, comprising:
- extracting a tissue from the subject comprising sera or blood cells;
- extracting a DNA sample from the tissue;
- and,
- detecting a methylation of a gene or gene region in the DNA, wherein the gene or gene region is selected from the group consisting of SALL3c gene (SEQ ID NO:1), ECEL1 gene (SEQ ID NO:2), and gene region SEQ ID NO:6.
A microarray for detecting a methylation of a gene or gene region, the microarray comprising:
- a solid-phase surface;
- a first marker for a SALL3c gene (SEQ ID NO:1);
- a second marker for a ECEL1 gene (SEQ ID NO:2);
- and,
- a third marker for a gene region SEQ ID NO:6;
- wherein, the first, second, and third markers are immobilized on the solid phase surface for the detection of the methylation of the genes or gene region.
A marker for detecting a methylation of a gene or gene region selected from the group consisting of SALL3c gene (SEQ ID NO:1), ECEL1 gene (SEQ ID NO:2), FOXC1 gene (SEQ ID NO:3), NRG3 gene (SEQ ID NO:4), KCNIP2 gene (SEQ ID NO:5), gene region SEQ ID NO:6, and gene region SEQ ID NO:7, the marker comprising an oligonucleotide having a component selected from the group consisting of SEQ ID NOs:8-35.
Dependencies are inferred from the claim text.