Polyal Drug Conjugates Comprising Variable Rate-Releasing Linkers
AssigneeMersana Therapeutics, Inc.
InventorsAleksandr Yurkovetskiy, Mao Yin, Gui Liu, Laura C. Akullian, John J. Kane, Cheri A. Stevenson, Charles E. Hammond, Russell C. Petter, John H. Van Duzer, Timothy B. Lowinger
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Abstract
Polyal-Drug conjugates comprising a variable rate-releasing linker are described along with methods of making such conjugates. Uses for such Polyal-Drug conjugates is also described.
Claims37
Conjugates of Formula I:
- wherein
- Polyal is a polyacetal or polyketal;
- Linker is a dicarboxylic acid moiety containing two or more atoms between the carbonyls;
- Tether is a bifunctional organic moiety comprising a secondary or tertiary amine;
- Ra is H, alkyl, or together with a CH2 of the backbone of the Tether forms a five- or six-membered ring;
- and
- Drug is any organic compound with a molecular weight of between about 200 daltons and 1000 daltons, capable of covalent attachment to the Tether;
- wherein
- when Linker is a dicarboxylic acid with two atoms between the carbonyls and Tether contains a nitrogen with no reactive hydrogen, the release half-life of Drug is from about 10 h to more than about 300 h;
- when Linker is a dicarboxylic acid with at least three atoms between the carbonyls and contains a heteroatom alpha to the carbonyl forming the ester, the release half-life is less than about 10 hours;
- when Linker is a dicarboxylic acid with at least three atoms between the carbonyls with no heteroatom alpha to the carbonyl forming the ester, the release half-life is more than about 100 hours;
- when Linker is a dicarboxylic acid with two atoms between the carbonyls and Tether contains a nitrogen with a reactive hydrogen the release half-life of Drug is from about 0.1 hours to about 24 hours;
- and
- wherein
- the release half-life being measured in 0.05M phosphate buffer, 0.9% saline, pH 7.4, at 37° C.;
- with the proviso that the conjugate of Formula I is not PHF-SA-Gly-CPT, PHF-(methyl)SA-Gly-CPT, PHF-(2,2-dimethyl)SA-Gly-CPT, PHF-(2-nonen-2-yl)SA-Gly-CPT, PHF-SA-Gly-Taxol, or PHF-SA-Gly-Illudin.
Conjugates of the Formula II
- wherein
- X is —CH2—, —OCH2—, or —CH2CH2—, wherein one or more of the CH2 is optionally substituted;
- R1 is H or CH3;
- R2 is —CH(Y)—C(O)—, wherein Y is one of the side chains of the naturally occurring amino acids, an aryl group, a heteroaryl group, a cycloalkyl, an alkyl group attached to both the N—R1 and the Drug, or a heterocycle;
- or R1 and R2 when taken together with nitrogen to which they are attached form a ring;
- Polyal is a polyacetal or polyketal;
- Drug is any organic compound with a molecular weight of between about 200 daltons and 1000 daltons, capable of covalent attachment to the Tether;
- wherein
- when Linker is a dicarboxylic acid with two atoms between the carbonyls and Tether contains a nitrogen with no reactive hydrogen, the release half-life of Drug is from about 10 h to more than about 300 h;
- when Linker is a dicarboxylic acid with at least three atoms between the carbonyls and contains a heteroatom alpha to the carbonyl forming the ester, the release half-life is less than about 10 hours;
- when Linker is a dicarboxylic acid with at least three atoms between the carbonyls with no heteroatom alpha to the carbonyl forming the ester, the release half-life is more than about 100 hours;
- when Linker is a dicarboxylic acid with two atoms between the carbonyls and Tether contains a nitrogen with a reactive hydrogen, the release half-life of Drug is from about 0.1 hours to about 24 hours;
- wherein
- the release half-life being measured in 0.05M phosphate buffer, 0.9% saline, pH 7.4, at 37° C.;
- with the proviso that the conjugate of Formula II is not PHF-SA-Gly-CPT, PHF-(methyl)SA-Gly-CPT, PHF-(2,2-dimethyl)SA-Gly-CPT, PHF-(2-nonen-2-yl)SA-Gly-CPT, PHF-SA-Gly-Taxol, or PHF-SA-Gly-Illudin.
A method of identifying a Polyal-Drug conjugate having a drug release half-life of between less than about 1 hour and greater than 300 hours as measured in PBS buffer at 37° C., the method comprising:
- selecting a dicarboxylic acid linker;
- obtaining a conjugate with said linker the conjugate comprising a polyal, a Drug, and said linker;
- and
- determining the release half-life of Drug from the conjugate.
Conjugates of the Formula III:
- and pharmaceutically acceptable salts thereof;
- wherein
- Polyal is a polyacetal or polyketal derived from cyclodextran;
- X is —CH2—, —OCH2—, or —CH2CH2—, wherein one or more of —CH2— is optionally substituted;
- R1 is H or CH3;
- R2 is —CH(Y)—C(O)—, wherein Y is one of the side chains of the naturally occurring amino acids, an aryl group, a heteroaryl group, a cycloalkyl, an alkyl group attached to both the N—R1 and the —NHC(O)— of the vinca alkaloid derivative, or a heterocycle;
- or R1 and R2, when taken together with nitrogen to which they are attached, form a ring;
- R7 is —CH3 or —CHO;
- and
- R8 is —OCOCH3 or OH.
Conjugates of the Formula IV:
- and pharmaceutically acceptable salts thereof;
- wherein
- Polyal is a polyacetal or polyketal;
- X is —CH2—, —OCH2—, or —CH2CH2—, wherein one or more of —CH2— is optionally substituted;
- R1 is H or CH3;
- R2 is —CH(Y)—C(O)—, wherein Y is one of the side chains of the naturally occurring amino acids, an aryl group, a heteroaryl group, a cycloalkyl, an alkyl group attached to both the N—R1 and the —O— of the non-natural camptothecin derivative, or a heterocycle;
- or R1 and R2 when taken together with nitrogen to which they are attached form a ring;
- R3 is —H, —Cl, —F, —OH or alkyl;
- or R3 and R4, may be taken together to form a five- or six-membered ring;
- R4 is —H, —F, —OH, —CH3, —CH═N—O-t-Butyl, —CH2CH2Si(CH3)3, or —Si((CH3)2)-t-Butyl;
- R5 is —CH2—N(CH3)2, NH2, or NO2;
- R6 is ethyl, N-methyl piperidine, cycloalkyl, —CH2CH2NHCH(CH3)2, or —N-4-methylcyclohexylamine;
- or R5 and R6, may be taken together to form a six-membered optionally substituted ring;
- p is 0 or 1;
- and
- q is 0 or 1;
- with the proviso that the conjugate is not PHF-SA-Gly-CPT, PHF-(methyl)SA-Gly-CPT, PHF-(2,2-dimethyl)SA-Gly-CPT, or PHF-(2-nonen-2-yl)SA-Gly-CPT.
A pharmaceutical composition comprising a conjugate of the Formula III:
- or a pharmaceutically acceptable salts thereof;
- wherein
- Polyal is a polyacetal or polyketal;
- X is —CH2—, —OCH2—, or —CH2CH2—, wherein one or more of —CH2— is optionally substituted;
- R1 is H or CH3;
- R2 is —CH(Y)—C(O)—, wherein Y is one of the side chains of the naturally occurring amino acids, an aryl group, a heteroaryl group, a cycloalkyl, an alkyl group attached to both the N—R1 and the —NHC(O)— of the vinca alkaloid derivative, or a heterocycle;
- or R1 and R2, when taken together with nitrogen to which they are attached, form a ring;
- R7 is —CH3 or —CHO;
- and
- R8 is —OCOCH3 or OH;
- and a pharmaceutically acceptable carrier.
A method of treating cancer, comprising administering to a subject in need thereof a polyal-vinca alkaloid conjugate of Formula III or a pharmaceutically acceptable salt thereof, in an amount effective to treat the cancer.
A pharmaceutical composition comprising a conjugate of Formula IV:
- and pharmaceutically acceptable salts thereof;
- wherein
- Polyal is a polyacetal or polyketal;
- X is —CH2—, —OCH2—, or —CH2CH2—, wherein one or more of —CH2— is optionally substituted;
- R1 is H or CH3;
- R2 is —CH(Y)—C(O)—, wherein Y is one of the side chains of the naturally occurring amino acids, an aryl group, a heteroaryl group, a cycloalkyl, an alkyl group attached to both the N—R1 and the —O— of the non-natural camptothecin derivative, or a heterocycle;
- or R1 and R2 when taken together with nitrogen to which they are attached form a ring;
- R3 is —H, —Cl, —F, —OH or alkyl;
- or R3 and R4, may be taken together to form a five- or six-membered ring;
- R4 is —H, —F, —OH, —CH3, —CH═N—O-t-Butyl, —CH2CH2Si(CH3)3, or —Si((CH3)2)-t-Butyl;
- R5 is —CH2—N(CH3)2, NH2, or NO2;
- R6 is ethyl, N-methyl piperidine, cycloalkyl, —CH2CH2NHCH(CH3)2, or —N-4-methylcyclohexylamine;
- or R5 and R6, may be taken together to form a six-membered optionally substituted ring;
- p is 0 or 1;
- and
- q is 0 or 1;
- and a pharmaceutically acceptable carrier;
- with the proviso that the conjugate is not PHF-SA-Gly-CPT, PHF-(methyl)SA-Gly-CPT, PHF-(2,2-dimethyl)SA-Gly-CPT, or PHF-(2-nonen-2-yl)SA-Gly-CPT.
A method of treating cancer, comprising administering to a subject in need thereof a polyal-non-natural camptothecin conjugate of the Formula IV or a pharmaceutically acceptable salt thereof, in an amount effective to treat the cancer.
Dependencies are inferred from the claim text.