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US 2009/0253121 A1Published application
Method for amt-rflp dna fingerprinting
OwnerMicah Halperninventor
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Abstract
An improved method for identifying and classifying organisms is provided. The method comprises the steps of obtaining a sample of DNA, isolating a portion of the sample to be analyzed, cutting the sample portion into at least two fragments, ligating both ends of the fragments with double-stranded linker sequences, adding the fragments to a polymerase chain reaction that amplifies a diagnostic region using a SYBR green-intercalating dye, and analyzing the fragments using a melt-curve analysis.
Claims11
A method for identifying a sample organism, comprising the steps of:
- obtaining a sample of DNA;
- isolating a portion of said sample to be analyzed;
- cutting said portion into at least two fragments;
- ligating both ends of said fragments with double-stranded linker sequences;
- adding said fragments to polymerase chain reaction using a dye;
- and
- analyzing said fragments using a melt-curve analysis.
4 more elements
A method for identifying a sample organism, comprising the steps of:
- obtaining a sample of DNA;
- cutting said sample by using a restriction endonuclease that recognizes a specific DNA cut site, wherein cutting produces at least one fragment of said sample;
- treating said cut sample with a phosphatase to remove phosphates from ends of said fragments;
- ligating a double-stranded linker sequence to each end of said fragments;
- adding at least one said fragment to a polymerase chain reaction using a SYBR green-intercalating dye, wherein said fragment is used as a template;
- amplifying said fragments by using one primer complementary to said ligated linker sequence and one primer complementary to a universal DNA sequence, wherein amplification produces at least two strands;
- denaturing at least two said strands at a high temperature;
- lowering said temperature until said strands reassemble, wherein said SYBR green dye is deposited between said strands;
- recording at least three data points as said temperature is slowly increased;
- comparing said data points with known information about organisms;
- and
- determining said identification of said sample organism.
9 more elements
Dependencies are inferred from the claim text.