Assays, methods and kits for detecting small nuclear ribonucleoprotein particle assembly and survival of motor neurons activity
AssigneeThe Trustees of the University of Pennsylvania
InventorsGideon Dreyfuss, Lili Wan, Elizabeth Ottinger
Life of this patent
Estimating the term…
Abstract
The present invention includes assays and kits for detecting the assembly of an RNA binding protein-RNA complex and for detecting the activity of an RNA binding protein.
Claims41
An assay to detect an RNA binding protein specifically binding to an RNA, said assay comprising:
- a) transcribing a nucleic acid molecule in vitro in the presence of a first label to generate a labeled RNA molecule;
- b) contacting said labeled RNA molecule with a cellular extract and adenosine triphosphate (ATP), thereby forming an RNA binding protein-RNA complex;
- c) contacting said complex with a first antibody that specifically binds said RNA binding protein protein;
- d) contacting said first antibody with a detectable second antibody that specifically binds said first antibody;
- and,
- e) detecting said second antibody, thereby detecting an RNA binding protein specifically binding to an RNA.
A kit for detecting an RNA binding protein specifically binding to an RNA, said kit comprising biotin-UTP, a first antibody that specifically binds an RNA binding protein, an detectable antibody that specifically binds said first antibody, and an instructional material for the use thereof.
An assay to detect the activity of an RNA binding protein, said assay comprising:
- a) transcribing a nucleic acid molecule in vitro in the presence of a first label to generate a labeled RNA molecule;
- b) contacting said labeled RNA molecule with a cellular extract and adenosine triphosphate (ATP), thereby forming an RNA binding protein-labeled RNA molecule complex;
- c) contacting said complex with a first antibody that specifically binds said RNA binding protein;
- d) contacting said first antibody with a detectable second antibody that specifically binds said first antibody;
- and,
- e) detecting said second antibody, thereby detecting activity of said RNA binding protein.
A kit for detecting RNA binding protein activity, said kit comprising biotin-UTP, a first antibody that specifically binds an RNA binding protein, an detectable antibody that specifically binds said first antibody, and an instructional material for the use thereof.
A method of determining the amount of RNA binding protein in a cell, the method comprising detecting the level of RNA binding protein-RNA complex formation in a cell, wherein a lower level of RNA binding protein-RNA complex formation indicates a lower amount of RNA binding protein in a cell, further wherein a higher level of RNA binding protein-RNA complex formation indicates a higher amount of RNA binding protein in a cell.
A method of identifying a compound that increases the level of RNA binding protein activity in a cell, the method comprising contacting a cell with a test compound and comparing the level of RNA binding protein-RNA complex formation in the cell with the level of RNA binding protein-RNA complex formation in an otherwise identical cell not contacted with the test compound, wherein a higher level of RNA binding protein-RNA complex formation in the cell contacted with the test compound compared with the level of RNA binding protein-RNA complex formation in the otherwise identical cell not contacted with the test compound is an indication that the test compound increases the level of RNA binding protein-RNA complex formation in a cell, thereby identifying a compound that increases the level of RNA binding protein activity in a cell.
A method of identifying a compound that decreases the level of RNA binding protein activity in a cell, the method comprising contacting a cell with a test compound and comparing the level of RNA binding protein-RNA complex formation in the cell with the level of RNA binding protein-RNA complex formation in an otherwise identical cell not contacted with the test compound, wherein a lower level of RNA binding protein-RNA complex formation in the cell contacted with the test compound compared with the level of RNA binding protein-RNA complex formation in the otherwise identical cell not contacted with the test compound is an indication that the test compound decreases the level of RNA binding protein-RNA complex formation in a cell, thereby identifying a compound that decreases the level of RNA binding protein activity in a cell.
An assay to detect a small nuclear ribonucleoprotein particle (snRNP) assembly, the assay comprising:
- a) transcribing a nucleic acid molecule in vitro in the presence of a first label to generate a labeled RNA molecule;
- b) contacting a substrate with said labeled RNA molecule wherein said labeled RNA specifically binds to said substrate;
- c) contacting said labeled RNA molecule with a cellular extract and adenosine triphosphate (ATP);
- d) contacting said labeled RNA molecule with a first antibody that specifically binds an Sm protein;
- e) contacting said first antibody with a second antibody that specifically binds said first antibody;
- and
- f) detecting said second antibody, thereby detecting snRNP assembly.
A kit for detecting snRNP assembly, said kit comprising a UTP-biotin, ATP, a first antibody that specifically binds an Sm protein, a second labeled antibody that specifically binds said first antibody, and an instructional material for the use thereof.
An assay to detect activity of the survival of motor neuron (SMN) complex, said assay comprising:
- a) transcribing a nucleic acid molecule in vitro in the presence of a first label to generate a labeled RNA molecule;
- b) contacting a substrate with said labeled RNA molecule wherein said labeled RNA specifically binds to said substrate;
- c) contacting said labeled RNA molecule with a cellular extract and adenosine triphosphate (ATP);
- d) contacting said labeled RNA molecule with a first antibody that specifically binds an Sm protein;
- e) contacting said first antibody with a second antibody that specifically binds said first antibody;
- and
- f) detecting said second antibody, thereby detecting activity of the SMN complex.
A kit for detecting activity of the survival of motor neuron (SMN) complex, said kit comprising a UTP-biotin, ATP, a first antibody that specifically binds an Sm protein, a second labeled antibody that specifically binds said first antibody, and an instructional material for the use thereof.
Dependencies are inferred from the claim text.