Pyrrolopyrimidine derivatives and analogs and their use in the treatment and prevention of diseases
AssigneeAmbit Biosciences Corporation
InventorsShamal Mehta, Andiliy Sai, Zdravko Milanov, Robert Grotzfeld, Hitesh Patel, David Lockhart
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Abstract
Described herein are compounds and compositions for modulating kinase activity, and methods for modulating kinase activity using the compounds and compositions. Also described herein are methods of using the compounds and/or compositions in the treatment and prevention of a variety of diseases and unwanted conditions in subjects.
Claims25
A method for treating a disease comprising administering to a subject in need thereof an effective amount of an epidermal growth factor receptor modulating compound corresponding to Formula (I):
- wherein:
- a. X1 is S or O;
- b. each of X2 and X3 is independently N, O, S, NR4, or CR6;
- c. R1 is —(CHR1a)z—R1b, where
- i. each R1a is independently H, (C1-C4)alkyl, F, (C1-C4)fluoroalkyl, (C1-C4)alkoxy, —C(O)OH, —C(O)—NH2, —C(O)—(C1-C4)alkyl, —C(O)—(C1-C4)fluoralkyl, —C(O)—(C1-C4)alkylamine, —(C1-C4)alkylamine, —(C1-C4)dialkylamine, or —C(O)—(C1-C4)alkoxy,
- ii. z is 0, 1, 2, or 3, and
- iii. R1b is
- where each Ra is independently H, halogen, substituted or unsubstituted alkyl, substituted or unsubstituted alkoxy, —CN, -L1-OH, -L1-NH2, -L1-(C1-C4)alkyl, -L1-(C3-C6)cycloalkyl, -L1-(C1-C4)fluoroalkyl, -L1-(C1-C4)alkoxy, -L1-(C1-C4)alkylamine, -L1-(C1-C4)dialkylamine and -L1-phenyl, wherein L1 is a bond, —C(O)—, or —S(O)2—;
- or
- R1b is H, —(C1-C4)alkyl, an optionally substituted —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, or an optionally substituted 5-membered or 6-membered unsaturated heterocycle;
- d. R3 is H or L3-(CHR3a)x—R3b, where
- i. L3 is a bond, NH, O, or S,
- ii. R3a is H, (C1-C4)alkyl, F, (C1-C4)fluoroalkyl, (C1-C4)alkoxy, —(C1-C4)alkylamine, or —(C1-C4)dialkylamine,
- iii. x is 0, 1, 2, or 3, and
- iv. R3b is phenyl, optionally substituted with 1-2 substituents independently selected from the group consisting of halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- e. R4 is H or —(CHR4a)y—R4b, where
- i. R4a is H, (C1-C4)alkyl, F, (C1-C4)fluoroalkyl, (C1-C4)alkoxy, —(C1-C4)alkylamine, or —(C1-C4)dialkylamine;
- ii. y is 0, 1, 2, or 3, and
- iii. R4b is substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted phenyl, or substituted or unsubstituted 5-membered or 6-membered unsaturated heterocycle;
- or
- R4 and R5, taken together, form a 5- or 6-membered heterocyclic aromatic ring structure, optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or
- when X2is NR4 and X3 is CR6, R1 and R4, taken together, form a 5- or 6-membered aromatic heterocycle optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or
- f. R5 is H or
- where each Rb is independently H, halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, —(C1-C4)dialkylamine, —C(O)OH, —C(O)—NH2, —C(O)—(C1-C4)alkyl, —C(O)—(C1-C4)fluoralkyl, —C(O)—(C1-C4)alkylamine, or —C(O)—(C1-C4)alkoxy;
- and
- g. R6 is H, heteroaryl, or phenyl, wherein the phenyl and the heteroaryl are optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or
- R6 and R5, taken together, form an aromatic carbocycle or heterocycle optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine, or
- when X2 is CR6 and X3 is NR4, R6 and R1, taken together, form a 5- or 6-membered aromatic heterocycle optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or a pharmaceutically acceptable salt, pharmaceutcaly acceptable N-oxide, pharmaceutically acitve metabolite, pharmaceutically acceptable prodrug, or pharmaceutically acceptable solvate thereof.
A method for treating a disease comprising administering to a subject in need thereof an effective amount of an EGFR kinase modulating compound corresponding to Formula (I):
- wherein:
- a. X1 is S or O;
- b. each of X2 and X3 is independently N, O, S, NR4, or CR6;
- c. R1 is —(CHR1a)z—R1b, where
- i. each R1a is independently H, (C1-C4)alkyl, F, (C1-C4)fluoroalkyl, (C1-C4)alkoxy, —C(O)OH, —C(O)—NH2, —C(O)—(C1-C4)alkyl, —C(O)—(C1-C4)fluoralkyl, —C(O)—(C1-C4)alkyl amine, —(C1-C4)alkylamine, —(C1-C4)dialkylamine, or —C(O)—(C1-C4)alkoxy,
- ii. z is 0, 1, 2, or 3, and
- iii. R1b is
- where each Ra is independently H, halogen, substituted or unsubstituted alkyl, substituted or unsubstituted alkoxy, —CN, -L1-OH, -L1-NH2, -L1-(C1-C4)alkyl, -L1-(C3-C6)cycloalkyl, -L1-(C1-C4)fluoroalkyl, -L1-(C1-C4)alkoxy, -L1-(C1-C4)alkylamine, -L1-(C1-C4)dialkylamine and -L1-phenyl, wherein L1 is a bond, —C(O)—, or —S(O)2—;
- or
- R1b is H, —(C1-C4)alkyl, an optionally substituted —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, or an optionally substituted 5-membered or 6-membered unsaturated heterocycle;
- d. R3 is H or L3-(CHR3a)x—R3b, where
- i. L3 is a bond, NH, O, or S,
- ii. R3a is H, (C1-C4)alkyl, F, (C1-C4)fluoroalkyl, (C1-C4)alkoxy, —(C1-C4)alkylamine, or —(C1-C4)dialkylamine,
- iii. x is 0, 1, 2, or 3, and
- iv. R3b is phenyl, optionally substituted with 1-2 substituents independently selected from the group consisting of halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- e. R4 is H or —(CHR4a)y—R4b, where
- i. R4a is H, (C1-C4)alkyl, F, (C1-C4)fluoroalkyl, (C1-C4)alkoxy, —(C1-C4)alkylamine, or —(C1-C4)dialkylamine;
- ii. y is 0, 1, 2, or 3, and
- iii. R4b is substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted phenyl, or substituted or unsubstituted 5-membered or 6-membered unsaturated heterocycle;
- or
- R4 and R5, taken together, form a 5- or 6-membered heterocyclic aromatic ring structure, optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or
- when X2 is NR4 and X3 is CR6, R1 and R4, taken together, form a 5- or 6-membered aromatic heterocycle optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or
- f. R5 is H or
- where each Rb is independently H, halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, —(C1-C4)dialkylamine, —C(O)OH, —C(O)—NH2, —C(O)—(C1-C4)alkyl, —C(O)—(C1-C4)fluoralkyl, —C(O)—(C1-C4)alkylamine, or —C(O)—(C1-C4)alkoxy;
- and
- g. R6 is H, heteroaryl, or phenyl, wherein the phenyl and the heteroaryl are optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or
- R6 and R5, taken together, form an aromatic carbocycle or heterocycle optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine, or
- when X2 is CR6 and X3 is NR4, R6 and R1, taken together, form a 5- or 6-membered aromatic heterocycle optionally substituted with 1-2 moieties independently selected from the group consisting of halogen, —CN, —OH, —NH2, —(C1-C4)alkyl, —(C3-C6)cycloalkyl, —(C1-C4)fluoroalkyl, —(C1-C4)alkoxy, —(C1-C4)alkylamine, and —(C1-C4)dialkylamine;
- or a pharmaceutically acceptable salt, pharmaceutcaly acceptable N-oxide, pharmaceutically acitve metabolite, pharmaceutically acceptable prodrug, or pharmaceutically acceptable solvate thereof.
A method for treating a disease comprising administering to a subject in need thereof an effective amount of an epidermal growth factor receptor modulating compound corresponding to:
- wherein:
- a. X1I is or O;
- b. each of X2I and X3I is independently N, O, S, NR4I, or CR6I;
- c. R1I is —(CHR1aI)zI—R1bI, where
- i. each R1aI is independently H, halogen or a substituted or unsubstituted moiety selected from alkyl, haloalkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, alkenyl, alkynyl, alkoxy, alkylamine, dialkylamine, —C(O)OH, —C(O)NH2, —C(O)-alkyl, —C(O)-haloalkyl, —C(O)-alkylamine, and —C(O)-alkoxy,
- ii. zI is 0, 1, 2, 3, or 4 and
- iii. R1bI is
- where each RaI is independently H, halogen, —CN, —OH, or a substituted or unsubstituted moiety selected from the group consisting of alkyl, alkoxy, haloalkyl, alkenyl, alkynyl, heteroalkyl, -L1-OH, -L1-NH2, -L1-alkyl, -L1-cycloalkyl, -L1-haloalkyl, -L1-alkoxy, -L1-alkylamine, -L1-dialkylamine and -L1-phenyl, wherein L1 is a bond, —C(O)—, or —S(O)2—;
- or
- R1bI is H, alkyl, or a substituted or unsubstituted moiety selected from cycloalkyl, haloalkyl, and heterocycle;
- d. R3I is H or L3I-(CHR3aI)x—R3bI, where
- i. L3I is a bond, NH, O, or S,
- ii. R3aI is H, alkyl, halogen, haloalkyl, alkoxy, alkylamine, or dialkylamine,
- iii. xI is 0, 1, 2, 3, or 4 and
- iv. R3bI is H or substituted or unsubstituted aryl or heteroaryl group;
- e. R4I is H or —(CHR4aI)yI—R4bI, where
- i. R4aI is H, alkyl, halogen, haloalkyl, alkoxy, alkylamine, or dialkylamine;
- ii. yI is 0, 1, 2, 3, or 4 and
- iii. R4bI is a substituted or unsubstituted moiety selected from alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl;
- or
- R4I and R5I, taken together, form a substituted or unsubstitued heteroaryl moiety;
- or
- when X1I is NR4I and X2I is CR6I, R1I and R4I, taken together, form a substituted or
- unsubstituted heterocycle;
- or
- f. R5I is H or
- where each RbI is independently H, halogen, —CN, —OH, —NH2, or a substituted or unsubstituted moiety selected from alkyl, cycloalkyl, haloalkyl, alkoxy, alkylamine, dialkylamine, —C(O)OH, —C(O)—NH2, —C(O)-alkyl, —C(O)-haloalkyl, —C(O)-alkylamine, and —C(O)-alkoxy;
- and
- g. R6I is H, substituted or unsubstituted heteroaryl, or substituted or unsubstituted aryl;
- or
- R6I and R5I, taken together, form a substituted or unsubstituted aryl or heteroaryl moiety, or
- when X1I is CR6I and X2I is NR4I, R6I and R1I, taken together, form a substituted or unsubstituted heterocycle;
- or a pharmaceutically acceptable salt, pharmaceutcaly acceptable N-oxide, pharmaceutically acitve metabolite, pharmaceutically acceptable prodrug, or pharmaceutically acceptable solvate thereof.
Dependencies are inferred from the claim text.