Detection of polymorphisms in the human 5-lipoxygenase gene
AssigneeMillennium Pharmaceuticals, Inc.
InventorsGlenn Barnes, Joanne Meyer
Life of this patent
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Abstract
The present invention is based at least in part on the discovery of polymorphisms within the 5-lipoxygenase gene which are included in a haplotype. Accordingly, the invention provides nucleic acid molecules having a nucleotide sequence of an allelic variant of a 5-LO gene. The invention also provides methods for identifying specific alleles of polymorphic regions of a 5-LO gene, methods for determining whether a patient has a more or less severe phenotype of an inflammatory disease or disorder such as asthma, methods for determining whether a patient will be more or less responsive to treatment with 5′LO inhibitors, forensic methods based on detection of polymorphisms within the 5-LO gene, and kits for performing such methods.
Claims36
An isolated nucleic acid molecule comprising an allelic variant of a polymorphic region of a 5-LO gene, wherein the allelic variant comprises one or more nucleotide sequences selected from the group consisting of those set forth in SEQ ID NO:4, SEQ ID NO:5, and SEQ ID NO:6, or the complement thereof.
An isolated nucleic acid molecule comprising a haplotype, wherein the haplotype comprises one or more of SEQ ID NO:
- 4, SEQ ID NO:
- 5, and SEQ ID NO:
- 6, one or more of SEQ ID NO:
- 7 and SEQ ID NO:
- 8, or the complements thereof, and wherein the nucleic acid molecule is a 5-LO gene.
An isolated nucleic acid molecule comprising the nucleotide sequence set forth in SEQ ID NO:1, or a portion thereof, wherein said nucleic acid molecule comprises one or more nucleotide residues selected from the group consisting of an adenine at residue 1000 of SEQ ID NO:1, deleted residues 472-477 of SEQ ID NO:1, and an adenine at residue 559 of SEQ ID NO:1, or the complements thereof.
A method for determining whether an asthma patient will be responsive to treatment with a 5-LO inhibitor, comprising
- a) obtaining a nucleic acid sample from the asthma patient;
- b) determining the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1;
- and
- c) determining whether the asthma patient will be responsive to treatment with a 5-LO inhibitor based on the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1, wherein the allelic variant comprises one or more nucleotide sequences selected from the group consisting of those set forth in SEQ ID NO:
- 4, SEQ ID NO:5, and SEQ ID NO:6, or the complement thereof.
A method for determining whether an asthma patient has a more or less severe asthma phenotype, comprising
- a) obtaining a nucleic acid sample from the asthma patient;
- b) determining the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1;
- and
- c) determining whether the asthma patient has a more or less severe asthma phenotype based on the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1, wherein the allelic variant comprises one or more nucleotide sequences selected from the group consisting of those set forth in SEQ ID NO:
- 4, SEQ ID NO:5, and SEQ ID NO:6, or the complement thereof.
A method for selecting the appropriate drug to administer to a patient who has asthma, comprising
- a) obtaining a nucleic acid sample from the patient;
- b) determining the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1;
- and
- c) selecting the appropriate drug to administer to a patient who has an inflammatory disease or disorder based on the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1, wherein the allelic variant comprises one or more nucleotide sequences selected from the group consisting of those set forth in SEQ ID NO:
- 4, SEQ ID NO:5, and SEQ ID NO:6, or the complement thereof.
A method of identifying a patient who is a candidate for effective treatment with a 5-LO inhibitor comprising the steps of:
- a) obtaining a nucleic acid sample from the patient;
- b) determining the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1;
- and
- c) identifying a patient who is a candidate for effective treatment with a 5-LO inhibitor based on the presence of an allelic variant which differs from the reference sequence set forth in SEQ ID NO:1, wherein the allelic variant comprises one or more nucleotide sequences selected from the group consisting of those set forth in SEQ ID NO:
- 4, SEQ ID NO:5, and SEQ ID NO:6, or the complement thereof.
A method for determining the identity of an allelic variant of a 5-LO gene in a nucleic acid obtained from a patient, wherein the sample comprises a 5-LO gene sequence, comprising contacting a sample nucleic acid from the patient with a probe or primer having a sequence which is complementary to a 5-LO gene sequence, wherein the probe or primer is selected from the group consisting of nucleic acids having a nucleotide sequence set forth in SEQ ID NO:
- 4, SEQ ID NO:5, or SEQ ID NO:6, or the complement thereof, and wherein the allelic variant comprises one or more nucleotide sequences selected from the group consisting of those set forth in SEQ ID NO:
- 4, SEQ ID NO:5, and SEQ ID NO:6, or the complements thereof, thereby determining the identity of the allelic variant.
Dependencies are inferred from the claim text.