Method and system for viewing chromatographic peaks over a network
AssigneeInfologic, Inc.
InventorsDAVID STANBURY, Yubo Xu, JIANDONG GUO, DAVID FURR
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AssigneeInfologic, Inc.
InventorsDAVID STANBURY, Yubo Xu, JIANDONG GUO, DAVID FURR
Estimating the term…
A method and system of publishing datafile and metafile images over a network connection. A user can use a web page to transmit the name of a datafile to the server hosting the peak viewing program. The server then processes the information, launches Chromview to generate the metafiles, then uses a series of HTML pages to display the information in a .PNG image file of the datafile on the user's computer screen. This page would have the datafile image, as well as information about the datafile (as applicable), such as the list of available ions, and start/stop times. The user could select an ion, or a start/stop time, and the resulting picture for the datafile would be displayed on his screen. The user can enlarge chosen areas of chromatograms and fragmentograms by entering values in text boxes or by clicking on two opposite corners of the selected area. The user can use either remote (Internet) or local (intranet) means to access the datafiles.
A method for displaying a graphic file of a chromatogram on a computer-implemented screen display, comprising the steps of:
A method for displaying a GC-MS fragmentogram on a computer implemented screen display comprising the steps of:
Dependencies are inferred from the claim text.
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Protocols: based on web technology, e.g. hypertext transfer protocol [HTTP]
Ict specially adapted for bioinformatics-related data visualisation
Digital communication
Bioinformatics, i.e. information and communication technology [ict] specially adapted for genetic or
Term end not estimated
The present invention relates to a method and system of publishing datafile and metafile images, as well as information relevant to those images, over a network, particularly one using Internet or intranet technology.
Chemists and other scientists frequently use analytical laboratory data in the form of chromatograms and fragmentograms generated by gas chromatography (GC) or gas chromatography/mass spectrometry (GC-MS) instruments. Such scientists have a need to view GC and GC-MS data via the Internet from their personal computers. It is known in the art that a GC or GC-MS trace can be converted to web-compatible graphic files such as JPEG or GIF formats. However, in doing so, the trace becomes a static image and loses resolution when zooming or stretching operations are performed. To overcome these drawbacks, programmers have used Java Applets in order to provide interactivity. However, issues related to Internet security have led to the installation of firewalls, most of which prohibit the downloading and execution of Java applications.
The present invention uses server application technology and JavaScript to allow a user to view GC or GC-MS traces interactively, without downloading or running any application other than the web browser. The method publishes datafile and metafile images and relevant information over a network, using Internet or intranet technology.
FIG. 1 depicts a simplified block diagram of the components suitable for practicing a preferred embodiment of the present invention.
FIG. 2 is a flowchart diagram illustrating the process steps of the present invention.
FIG. 3 is a representation of a page displaying a list of samples a geochemist may use for selecting data.
In the embodiment described herein, the user can be coupled over a network's setting or can access the server remotely via an Internet connection. In both cases, the connection operates using Hypertext Transfer Protocol (HTTP).
As shown in FIG. 1, a scientist can “use” the peak viewing program of the present invention by operating a client computer 10 to open a website with the browser 11; he clicks on a link to send information over the network connection 12 to the server 13 using Hypertext Markup Language (HTML). The information, which is processed using Visual Basic and Active Server Pages, relates to GC and GC-MS data in the datafile storage 14. The server 13 uses Chromview.exe 15 to generate a metafile of the selected datafile, then MetaConverts converts the metafile to a .PNG file, then a Chromview and MetaConverter generate a larger image of the file over the browser 11, along with other information. Since Chromview and MetaConverter (hereinafter simply referred to as Chromview) operate on the server 13, the user does not need to download or operate any software.
As the flowchart of FIG. 2 shows, at 21, the browser opens a website showing chromatographic information of interest to the user. Links on the page are associated with the peaks of different chromatograms in the datafile. The user clicks on a list, and, at 22, information is sent to the server and processed suing Visual Basic and Active Server Pages. Chromview is activated and, at 23, chromatographic peaks and related information are sent to the website and displayed to the user. At 24, the user may select new start/end times and/or amplitudes for the peaks. That information, again at 22, is sent to the server and processed, Chromview is activated, and, at 23, new chromatographic peaks and related information are displayed to the user. At 25, when GC-MS data is sought, one or more ions may be selected for viewing, or peak/baseline labels may be added for either GC or GC-MS data, and, at 22, the information is sent to the server 13 and processed, Chromview is activated, and, at 23, new chromatographic peaks and related information are displayed to the user.