Polymorphisms associated with hypertension
AssigneeAffymetrix, Inc.
InventorsJian Bing Fan, Aravinda Chakravarti, Marc Kenneth Halushka
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Abstract
The invention discloses a collection of polymorphic sites in genes know or suspected to have a role in hypertension. The invention provides nucleic acids including such polymorphic sites. The nucleic acids can be used as probes or primers or for expressing variant proteins. The invention also provide methods of analyzing the polymorphic forms occupying the polymorphic sites.
Claims38
A nucleic acid of between 10 and 100 bases comprising at least 10 contiguous nucleotides including a polymorphic site from a sequence shown in Table 1, column 8 or the complement thereof.
Allele-specific oligonucleotide that hybridizes to a sequence including a polymorphic site shown in Table 1 or the complement thereof.
An isolated nucleic acid comprising a sequence of Table 1, column 8 or the complement thereof, wherein the polymorphic site within the sequence or its complement is occupied by a base other than the reference base show in Table 1, column 3.
A method of analyzing a nucleic acid, comprising:
- obtaining the nucleic acid from an individual;
- and
- determining a base occupying any one of the polymorphic sites shown in Table 1 or other polymorphic sites in equilibrium dislinkage therewith.
A method of diagnosing a phenotype comprising:
- determining which polymorphic form(s) are present in a sample from a subject at one or more polymorphic sites shown in Table 1;
- diagnosing the presence of a phenotype correlated with the form(s) in the subject.
A method of screening for a polymorphic site suitable for diagnosing a phenotype, comprising:
- identifying a polymorphic site linked to a polymorphic site shown in Table 1, wherein a polymorphic form of the polymorphic site shown in Table 1 has been correlated with a phenotype;
- and
- determining haplotypes in a population of individuals to indicate whether the linked polymorphic site has a polymorphic form in equlibrium dislinkage with the polymorphic form correlated with the phenotype.
A computer-readable storage medium for storing data for access by an application program being executed on a data processing system, comprising:
- a data structure stored in the computer-readable storage medium, the data structure including information resident in a database used by the application program and including:
- a plurality of records, each record of the plurality comprising information identifying a polymorphisms shown in Table 1.
A signal carrying data for access by an application program being executed on a data processing system, comprising:
- a data structure encoded in the signal, said data structure including information resident in a database used by the application program and including:
- a plurality of records, each record of the plurality comprising information identifying a polymorphism shown in Table 1
Dependencies are inferred from the claim text.