Interaction-activated, circularly permutated proteins
AssigneeKaloBios, Inc.
InventorsRobert F. Balint, Jeng-Horng Her
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AssigneeKaloBios, Inc.
InventorsRobert F. Balint, Jeng-Horng Her
Estimating the term…
Interaction-activated circularly permutated proteins are disclosed that depend for their functional reassembly into the parent protein on the interaction of heterologous polypeptides or other molecules which have been genetically or chemically conjugated to the break-point termini of engineered enzymes. In addition, methods are provided for identifying circularly permutated marker proteins that will optimally reassemble into a functional parent protein, and which are dependent on the association of heterologous interactor domains. The invention is exemplified by circular permutations of a Class A β-lactamase (TEM-1 of E. coli). Circularly permutated marker proteins that comprise molecular interaction-dependent enzymes particularly find use in (1) cell-based sensors for activation or inhibition of metabolic or signal transduction pathways for high-efficiency, (2) high-throughput screening for agonists/antagonists of the target pathway and in high-throughput mapping of pair-wise protein-protein interactions within and between the proteomes of cells, tissues, and pathogenic organisms, and in (3) cell-based screens for high-throughput selection of inhibitors of any protein-protein interaction.
A method of identifying a second oligopeptide to which a first oligopeptide binds, said method comprising:
A method of identifying a second oligopeptide to which a first oligopeptide binds, said method comprising:
A method of identifying a third oligopeptide to which a first oligopeptide and a second oligopeptide simultaneously bind, said method comprising:
An interaction-dependent enzyme activation system, said system comprising:
An interaction-dependent enzyme activation system, said system comprising:
An intracellular signal transduction biosensor, said biosensor comprising:
An expression cassette comprising:
A DNA sequence comprising as operably linked components in the direction of transcription, nucleic acid sequences encoding a first interactor domain, a circularly permutated marker protein, and a second interactor domain, wherein said circularly permutated marker protein functionally reassembles upon binding of said first and said second interactor domains to each other or simultaneously to a third polypeptide.
A circularly permutated marker protein fused in frame through each of its N- and C-termini to a first interactor domain and a second interactor domain, wherein said circularly permutated marker protein functionally reassembles upon the binding of said first and said second interactor domains to each other or simultaneously to a third polypeptide.
A method of high-throughput identification of compounds that inhibit phosphorylation-regulated cell signal transducers, said method comprising:
Dependencies are inferred from the claim text.