Epoxide hydrolases, nucleic acids encoding them and methods for making and using them
AssigneeDiversa Corporation
InventorsLishan Zhao, Eric J. Mathur, David Weiner, Toby Richardson, Aileen Milan, Mark J. Burk, Bin Han, Jay M. Short
Life of this patent
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Abstract
The invention is directed to polypeptides having epoxide hydrolase activity, polynucleotides encoding the polypeptides, antibodies that bind to these polypeptides, and methods for making and using these polynucleotides and polypeptides. The epoxide hydrolases are used to catalyze the hydrolysis of epoxides and arene oxides to their corresponding diols.
Claims201
An isolated or recombinant nucleic acid comprising
- a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the nucleic acid encodes at least one polypeptide having an epoxide hydrolase activity, and the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection.
An isolated or recombinant nucleic acid, wherein the nucleic acid comprises a sequence that hybridizes under stringent conditions to a nucleic acid comprising
- a sequence as set forth in SEQ ID NO:1,
- a sequence as set forth in SEQ ID NO:3,
- a sequence as set forth in SEQ ID NO:5,
- a sequence as set forth in SEQ ID NO:7,
- a sequence as set forth in SEQ ID NO:9,
- a sequence as set forth in SEQ ID NO:11,
- a sequence as set forth in SEQ ID NO:13,
- a sequence as set forth in SEQ ID NO:15,
- a sequence as set forth in SEQ ID NO:17,
- a sequence as set forth in SEQ ID NO:19,
- a sequence as set forth in SEQ ID NO:21,
- a sequence as set forth in SEQ ID NO:23,
- a sequence as set forth in SEQ ID NO:25,
- a sequence as set forth in SEQ ID NO:27,
- a sequence as set forth in SEQ ID NO:29,
- a sequence as set forth in SEQ ID NO:31,
- a sequence as set forth in SEQ ID NO:33,
- a sequence as set forth in SEQ ID NO:35,
- a sequence as set forth in SEQ ID NO:37,
- a sequence as set forth in SEQ ID NO:39,
- a sequence as set forth in SEQ ID NO:41,
- a sequence as set forth in SEQ ID NO:43,
- a sequence as set forth in SEQ ID NO:45,
- a sequence as set forth in SEQ ID NO:47,
- a sequence as set forth in SEQ ID NO:49,
- a sequence as set forth in SEQ ID NO:51,
- a sequence as set forth in SEQ ID NO:53,
- a sequence as set forth in SEQ ID NO:55,
- a sequence as set forth in SEQ ID NO:57,
- a sequence as set forth in SEQ ID NO:59,
- a sequence as set forth in SEQ ID NO:61,
- a sequence as set forth in SEQ ID NO:63,
- a sequence as set forth in SEQ ID NO:65,
- a sequence as set forth in SEQ ID NO:67,
- a sequence as set forth in SEQ ID NO:69,
- a sequence as set forth in SEQ ID NO:71,
- a sequence as set forth in SEQ ID NO:73,
- a sequence as set forth in SEQ ID NO:75,
- a sequence as set forth in SEQ ID NO:77, or
- a sequence as set forth in SEQ ID NO:79,
- wherein the nucleic acid encodes a polypeptide having an epoxide hydrolase activity.
A nucleic acid probe for identifying a nucleic acid encoding a polypeptide with an epoxide hydrolase activity, wherein the probe comprises at least 10 consecutive bases of a sequence comprising:
- a sequence as set forth in SEQ ID NO:1,
- a sequence as set forth in SEQ ID NO:3,
- a sequence as set forth in SEQ ID NO:5,
- a sequence as set forth in SEQ ID NO:7,
- a sequence as set forth in SEQ ID NO:9,
- a sequence as set forth in SEQ ID NO:11,
- a sequence as set forth in SEQ ID NO:13,
- a sequence as set forth in SEQ ID NO:15,
- a sequence as set forth in SEQ ID NO:17,
- a sequence as set forth in SEQ ID NO:19,
- a sequence as set forth in SEQ ID NO:21,
- a sequence as set forth in SEQ ID NO:23,
- a sequence as set forth in SEQ ID NO:25,
- a sequence as set forth in SEQ ID NO:27,
- a sequence as set forth in SEQ ID NO:29,
- a sequence as set forth in SEQ ID NO:31,
- a sequence as set forth in SEQ ID NO:33,
- a sequence as set forth in SEQ ID NO:35,
- a sequence as set forth in SEQ ID NO:37,
- a sequence as set forth in SEQ ID NO:39,
- a sequence as set forth in SEQ ID NO:41,
- a sequence as set forth in SEQ ID NO:43,
- a sequence as set forth in SEQ ID NO:45,
- a sequence as set forth in SEQ ID NO:47,
- a sequence as set forth in SEQ ID NO:49,
- a sequence as set forth in SEQ ID NO:51,
- a sequence as set forth in SEQ ID NO:53,
- a sequence as set forth in SEQ ID NO:55,
- a sequence as set forth in SEQ ID NO:57,
- a sequence as set forth in SEQ ID NO:59,
- a sequence as set forth in SEQ ID NO:61,
- a sequence as set forth in SEQ ID NO:63,
- a sequence as set forth in SEQ ID NO:65,
- a sequence as set forth in SEQ ID NO:67,
- a sequence as set forth in SEQ ID NO:69,
- a sequence as set forth in SEQ ID NO:71,
- a sequence as set forth in SEQ ID NO:73,
- a sequence as set forth in SEQ ID NO:75,
- a sequence as set forth in SEQ ID NO:77,
- a sequence as set forth in SEQ ID NO:79
- wherein the probe identifies the nucleic acid by binding or hybridization.
A nucleic acid probe for identifying a nucleic acid encoding a polypeptide having an epoxide hydrolase activity, wherein the probe comprises a nucleic acid comprising
- a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by visual inspection.
An amplification primer sequence pair for amplifying a nucleic acid encoding a polypeptide having a epoxide hydrolase activity, wherein the primer pair is capable of amplifying a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:11, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A method of amplifying a nucleic acid encoding a polypeptide having an epoxide hydrolase activity comprising amplification of a template nucleic acid with an amplification primer sequence pair capable of amplifying a nucleic acid sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
An expression cassette comprising a nucleic acid comprising:
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A vector comprising a nucleic acid comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:11, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A transformed cell comprising a vector, wherein the vector comprises
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:11, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A transformed cell comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A transgenic non-human animal comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:11, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A transgenic plant comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:11, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A transgenic seed comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
An antisense oligonucleotide comprising a nucleic acid sequence complementary to or capable of hybridizing under stringent conditions to
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:11, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A method of inhibiting the translation of an epoxide hydrolase message in a cell comprising administering to the cell or expressing in the cell an antisense oligonucleotide comprising a nucleic acid sequence complementary to or capable of hybridizing under stringent conditions to a nucleic acid comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
An isolated or recombinant polypeptide comprising
- (a) a polypeptide comprising
- an amino acid sequence having at least 50% identity to SEQ ID NO:2, SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:8, SEQ ID NO:12, SEQ ID NO:14, SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:20, SEQ ID NO:22, SEQ ID NO:32, SEQ ID NO:34, SEQ ID NO:36, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:46, SEQ ID NO:48, SEQ ID NO:54, SEQ ID NO:58, SEQ ID NO:60, SEQ ID NO:62, SEQ ID NO:64, SEQ ID NO:68, SEQ ID NO:70, SEQ ID NO:72, SEQ ID NO:74, SEQ ID NO:76, SEQ ID NO:78, or SEQ ID NO:80 over a region of at least about 100 residues,
- an amino acid sequence having at least 60% identity to SEQ ID NO:10, SEQ ID NO:24, SEQ ID NO:28, SEQ ID NO:30, SEQ ID NO:40, SEQ ID NO:50, SEQ ID NO:52, SEQ ID NO:56, or SEQ ID NO:66 over a region of at least about 100 residues,
- an amino acid sequence having at least 70% identity to SEQ ID NO:26, or SEQ ID NO:38 over a region of at least about 100 residues, or
- (b) a polypeptide encoded by a nucleic acid comprising
- (i) a nucleic acid sequence having at least 50% sequence identity to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:53, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, or SEQ ID NO:79 over a region of at least about 100 residues,
- a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:9, SEQ ID NO:23, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:39, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:55, or SEQ ID NO:65 over a region of at least about 100 residues, or
- a nucleic acid sequence having at least 70% sequence identity to SEQ ID NO:25, or SEQ ID NO:37 over a region of at least about 100 residues,
- wherein the sequence identities are determined by analysis with a sequence comparison algorithm or by a visual inspection;
- or,
- (ii) a nucleic acid that hybridizes under stringent conditions to a nucleic acid comprising a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:3, or a subsequence thereof, a sequence as set forth in SEQ ID NO:5, or a subsequence thereof, a sequence as set forth in SEQ ID NO:7, or a subsequence thereof, a sequence as set forth in SEQ ID NO:9, or a subsequence thereof, a sequence as set forth in SEQ ID NO:1, or a subsequence thereof, a sequence as set forth in SEQ ID NO:13, or a subsequence thereof, a sequence as set forth in SEQ ID NO:15, or a subsequence thereof, a sequence as set forth in SEQ ID NO:17, or a subsequence thereof, a sequence as set forth in SEQ ID NO:19, or a subsequence thereof, a sequence as set forth in SEQ ID NO:21, or a subsequence thereof, a sequence as set forth in SEQ ID NO:23, or a subsequence thereof, a sequence as set forth in SEQ ID NO:25, or a subsequence thereof, a sequence as set forth in SEQ ID NO:27, or a subsequence thereof, a sequence as set forth in SEQ ID NO:29, or a subsequence thereof, a sequence as set forth in SEQ ID NO:31, or a subsequence thereof, a sequence as set forth in SEQ ID NO:33, or a subsequence thereof, a sequence as set forth in SEQ ID NO:35, or a subsequence thereof, a sequence as set forth in SEQ ID NO:37, or a subsequence thereof, a sequence as set forth in SEQ ID NO:39, or a subsequence thereof, a sequence as set forth in SEQ ID NO:41, or a subsequence thereof, a sequence as set forth in SEQ ID NO:43, or a subsequence thereof, a sequence as set forth in SEQ ID NO:45, or a subsequence thereof, a sequence as set forth in SEQ ID NO:47, or a subsequence thereof, a sequence as set forth in SEQ ID NO:51, or a subsequence thereof, a sequence as set forth in SEQ ID NO:53, or a subsequence thereof, a sequence as set forth in SEQ ID NO:55, or a subsequence thereof, a sequence as set forth in SEQ ID NO:57, or a subsequence thereof, a sequence as set forth in SEQ ID NO:59, or a subsequence thereof, a sequence as set forth in SEQ ID NO:61, or a subsequence thereof, a sequence as set forth in SEQ ID NO:63, or a subsequence thereof, a sequence as set forth in SEQ ID NO:65, or a subsequence thereof, a sequence as set forth in SEQ ID NO:67, or a subsequence thereof, a sequence as set forth in SEQ ID NO:69, or a subsequence thereof, SEQ ID NO:71, or a subsequence thereof, SEQ ID NO:73, or a subsequence thereof, SEQ ID NO:75, or a subsequence thereof, SEQ ID NO:77, or a subsequence thereof, SEQ ID NO:79, or a subsequence thereof.
A method for isolating or recovering a nucleic acid encoding a polypeptide with an epoxide hydrolase activity from an environmental sample comprising the steps of:
- (a) providing an amplification primer sequence pair for amplifying a nucleic acid encoding a polypeptide with an epoxide hydrolase activity, wherein the primer pair is capable of amplifying SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:9, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:23, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:37, SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:53, SEQ ID NO:55, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:65, SEQ ID NO:67, SEQ ID NO:69, or a subsequence thereof;
- (b) isolating a nucleic acid from the environmental sample or treating the environmental sample such that nucleic acid in the sample is accessible for hybridization to the amplification primer pair;
- and,
- (c) combining the nucleic acid of step (b) with the amplification primer pair of step (a) and amplifying nucleic acid from the environmental sample, thereby isolating or recovering a nucleic acid encoding a polypeptide with an epoxide hydrolase activity from an environmental sample.
A method for producing a library of nucleic acids encoding a plurality of modified epoxide hydrolase active sites or substrate binding sites, wherein the modified active sites or substrate binding sites are derived from a first nucleic acid comprising a sequence encoding a first active site or a first substrate binding site the method comprising the following steps:
- (a) providing a first nucleic acid encoding a first active site or first substrate binding site, wherein the first nucleic acid sequence comprises a sequence that hybridizes under stringent conditions to a sequence as set forth in SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:9, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:17, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:23, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:35, SEQ ID NO:37, SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:43, SEQ ID NO:45, SEQ ID NO:47, SEQ ID NO:49, SEQ ID NO:51, SEQ ID NO:53, SEQ ID NO:55, SEQ ID NO:57, SEQ ID NO:59, SEQ ID NO:61, SEQ ID NO:63, SEQ ID NO:65, SEQ ID NO:67, SEQ ID NO:69, SEQ ID NO:71, SEQ ID NO:73, SEQ ID NO:75, SEQ ID NO:77, SEQ ID NO:79, or a subsequence thereof, and the nucleic acid encodes a epoxide hydrolase active site or an epoxide hydrolase substrate binding site;
- (b) providing a set of mutagenic oligonucleotides that encode naturally-occurring amino acid variants at a plurality of targeted codons in the first nucleic acid;
- and,
- (c) using the set of mutagenic oligonucleotides to generate a set of active site-encoding or substrate binding site-encoding variant nucleic acids encoding a range of amino acid variations at each amino acid codon that was mutagenized, thereby producing a library of nucleic acids encoding a plurality of modified epoxide hydrolase active sites or substrate binding sites.
An isolated nucleic acid molecule selected from the group consisting of:
- (a) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:81;
- (b) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:82;
- (c) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:83;
- (d) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:84;
- (e) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:85;
- (f) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:86;
- (g) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:87;
- (h) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:88;
- (i) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:89;
- (j) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:90;
- (k) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:91;
- and
- (e) a nucleic acid molecule which encodes a polypeptide comprising the amino acid sequence set forth in SEQ ID NO:92.
An isolated polypeptide selected from the group consisting of:
- a) a fragment of a polypeptide comprising the amino acid sequence of SEQ ID NO:81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91 or 92, wherein the fragment comprises at least 15 contiguous amino acids of SEQ ID NO:81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91 or 92;
- b) a naturally occurring allelic variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91 or 92;
- and
- c) a polypeptide comprising an amino acid sequence which is at least 60% homologous to the amino acid sequence of SEQ ID NO:81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91 or 92.
Dependencies are inferred from the claim text.