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US 2002/0119962 A1Published application
Novel urea compounds, compositions and methods of use and preparation
AssigneeVicuron Pharmaceuticals Inc.
InventorsJeffrey W. Jacobs, Dinesh Patel, Jason Lewis, Zhi-Jie Ni
Life of this patent
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Abstract
Novel hydroxamic acid compounds are disclosed. These hydroxamates inhibit peptide deformylase (PDF), an enzyme present in prokaryotes and are therefore useful as antimicrobials and antibiotics. Methods of synthesis and of use of the compounds are also disclosed.
Claims17
A compound of Formula (I):
- 88
- wherein:
- R10 is selected from the group consisting of hydrogen, R14, R15OH, and R15—O—R16, where R14 and R16 are independently selected from the group consisting of —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or —(C0-C8 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C8 alkyl or substituted alkyl);
- and R15 is selected from the group consisting of —(C1-C12) alkylene, substituted alkylene, or heteroalkylene, —(C1-C12) alkenylene, substituted alkenylene, or heteroalkenylene, —(C1-C12) alkynylene, substituted alkynylene, or heteroalkynylene, or —(C0-C8 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C8 alkylene or substituted alkylene);
- R11 is selected from the group consisting of hydrogen, —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or —(C0-C12 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C12 alkyl or substituted alkyl);
- n1 is an integer from 1 to 5;
- zero or one Y is selected from the group consisting of —O—, —NR17—, and —S—, and all remaining Y are —CR12R13—;
- where R12 and R13 are each independently hydrogen, R17, —OH, —OR17, —SH, —SR17, —NH2, —NHR17, —NR17R18, —C(═O)R17, —C(═O)NR17R18, —C(═O)OR17, —C(═O)SR17, —C(═O)CR17R18R19, —C(═O)O CR17R18R19, —S(═O)2NR17R18, —N(R17)C(═O)R18, —N(R17)C(═O)OR18, —N(R17)S(═O)2R18, or —N(R17)S(═O)2OR18, or where two vicinal R12 or R13 groups combine to formn a substituted or unsubstituted —(C4-C10) cyclic alkyl, cyclic heteroalkyl, aryl or heteroaryl group;
- where R17, R18 and R19 are each independently hydrogen, —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, alkoxy, or —(C0-C8 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C8 alkyl or substituted alkyl), or where, when two or three of R17, R18 and R19 are attached to the same atom, two or three of R17, R18 and R19 can combine to form a substituted or unsubstituted —(C4-C10)cyclic alkyl, cyclic heteroalkyl, aryl or heteroaryl group;
- or a pharmaceutically acceptable salt thereof.
7 more elements
A compound of Formula (Ia):
- 95
- wherein:
- R1 is selected from the group consisting of hydrogen, Rs, and —Rt—O—Rs where Rs is selected from the group consisting of —(C1-C12) alkyl, —(C1-C12) alkenyl, or —(C1-C12) alkynyl;
- and Rt is selected from the group consisting of —(C1-C12) alkylene, —(C1-C12) alkenylene, or —(C1-C12) alkynylene;
- R5 is selected from the group consisting of hydrogen, —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or —(C0-C12 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C12 alkyl or substituted alkyl);
- n is an integer from 1 to 5;
- zero or one Y is selected from the group consisting of —O—, —NRa—, and —S—, and all remaining Y are —CR6R7—;
- and where R6 and R7 are each independently hydrogen, Rc, —OH, —ORc, —SH, —SRc, —NH2, —NHRc, —NRcRd, —C(═O)Rc, —C(═O)NRcRd, —(═O)ORc, —C(═O)SRc, —C(═O)CRcRdRe, —C(═O)OCRcRdRe, —S(═O)2NRcRd, —N(Rc)C(═O)Rd, —N(Rc)C(═O)ORd, —N(Rc)S(═O)2Rd, or —N(Rc)S(═O)2ORd, or where two vicinal R6 or R7 groups combine to form a substituted or unsubstituted C4-C10 cyclic alkyl, cyclic heteroalkyl, aryl or heteroaryl group;
- where Rc, Rd and Re are each independently hydrogen, —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or —(C0-C8 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C8 alkyl or substituted alkyl), or where, when two or three of Rc, Rd and Re are attached to the same atom, two or three of Rc, Rd and Re can combine to form a substituted or unsubstituted —(C4-C10) cyclic alkyl, cyclic heteroalkyl, aryl or heteroaryl group;
- or a pharmaceutically acceptable salt thereof.
7 more elements
A compound of the Formula (Ib):
- 96
- wherein:
- R1 is selected from the group consisting of hydrogen, Ra, —Rb—OH, and —Rb—O—Ra where Ra is selected from the group consisting of —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or —(C0-C8 alkyl or substituted alkyl)-(C3-C12 aryl or heteroaryl)-(C0-C8 alkyl or substituted alkyl);
- and Rb is selected from the group consisting of —(C1-C12) alkylene, substituted alkylene, or heteroalkylene, —(C1-C12) alkenylene, substituted alkenylene, or heteroalkenylene, —(C1-C12) alkynylene, substituted alkynylene, or heteroalkynylene, or —(C0-C8 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C8 alkyl or substituted alkyl);
- R5 is selected from the group consisting of hydrogen, —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or —(C0-C12 alkyl or substituted alkyl)-(C3-C12 aryl or heteroaryl)-(C0-C12 alkyl or substituted alkyl);
- n is an integer from 1 to 5;
- zero or one Y is selected from the group consisting of —O—, NRa, and —S—, and all remaining Y are —CR6R7—;
- and R6 and R7 are each independently —H, —Rh, —OH, —ORh, —SH, —SRh, —NH2, —NHRh, —NRhRi, —C(═O)H, —C(═O)Rh, —C(═O)NH2, —C(═O)NHRh, —C(═O)NRhRi, —C(═O)OH, —C(═O)ORh, —C(═O)SH, —C(═O)SRh, —C(═O)CH3, —C(═O)CH2Rh, —C(═O)CHRhRi, —C(═O)CRhRlRj, —C(═O)OCH3, —C(═O)OCH2Rh, —C(═O)OCHRhRl, —C(═O)OCRhRlRj, —S(═O)2NH2, —S(═O)2NHRh, —S(═O)2NRhRi, —NHC(═O)H, —N(Rh)C(═O)H, —NHC(═O)Ri, —NHC(═O)ORi, —N(Rh)C(═O)Ri, —N(Rh)C(═O)ORl, —NHS(═O)2H, —N(Rh)S(═O)2H, —NHS(═O)2ORi, —N(Rh)S(═O)2ORi, —N(H)S(═O)2Ri, or —N(Rh)S(═O)2Ri;
- where Rh, Ri and Rj are each independently —(C1-C12) alkyl, substituted alkyl, or heteroalkyl, —(C1-C12) alkenyl, substituted alkenyl, or heteroalkenyl, —(C1-C12) alkynyl, substituted alkynyl, or heteroalkynyl, or (C0-C8 alkylene or substituted alkylene)-(C3-C12 arylene or heteroarylene)-(C0-C8 alkyl or substituted alkyl) or a pharmaceutically acceptable salt thereof.
6 more elements
A compound selected from the group consisting of:
- N-hydroxy-2-[N-(3-methylbutyl)-N-(2-(S)-3-phenoxy-phenylaminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide;
- N-hydroxy-2-[N-(2-cyclopentylethyl)-N-(2-(S)-2-methyl-1,3,4-thiadiazol-5-ylaminocarbonyl)pyrrolidin-1-carbonyl)amino]acetamide;
- N-hydroxy-2-[N-(2-cyclopentylethyl)-N-(2-(S)-thiazol-2-ylaminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide;
- N-hydroxy-2-[N-(2-cyclopentylethyl)-N-(2-(S)-6-phenylimidazol-2-yl aminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide;
- N-hydroxy-2-[N-(2-cyclopentylethyl)-N-(2-(S)-pyrazin-2-ylaminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide;
- N-hydroxy-2-[N-(3-methylbutyl)-N-(2-(S)-3-methylbutylaminocarbonyl)-pyrrolidin-1-carbonyl) amino]acetamide;
- N-hydroxy-2-[N-(2-cyclopentylethyl)-N-(2-(S)-imidazol-2-ylaminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide;
- N-hydroxy-2-[N-(2-cyclopentylethyl)-N-(2-(S)-4,5-dimethylthiazol-2-yl aminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide;
- and
- N-hydroxy-2-[N-(3-methylbutyl)-N-(2-(S)-4,5-dimethylthiazol-2-yl aminocarbonyl)-pyrrolidin-1-carbonyl)amino]acetamide or a pharmaceutically acceptable salt thereof.
7 more elements
Dependencies are inferred from the claim text.