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US 2001/0041340 A1Published application
Poly-primed amplification of nucleic acid sequences
AssigneeMolecular Staging, Inc.
InventorsStephen Kingsmore, R. Steven Wiltshire, Jeremy P. Lambert
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Abstract
Methods for the amplification of selected nucleic acids at high rate but with high specificity and control are disclosed using a secondary, tertiary, quaternary or higher order platform especially designed to amplify selected sequences within the primary product of linear or exponential rolling circle amplification and amplifying said sequences along with specialized detector or reporter molecules that serve to enhance the ability to detect the amplification products.
Claims31
A process for selectively amplifying nucleic acid sequences, comprising:
- (a) mixing at least one single stranded non-circular first-stage oligonucleotide primer (P1) and at least one single stranded first-stage amplification target circle (ATC1) to produce a primer-ATC sample mixture;
- (b) incubating said primer-ATC1 sample mixture under conditions that promote hybridization between the oligonucleotide primer (P) and the amplification target circle (ATC1) to form a hybridized primer-ATC1 sample mixture and allowing sufficient time to pass for hybridized primer-ATC1 complexes to form;
- (c) mixing a DNA polymerase and at least two deoxynucleotide triphosphates with said hybridized primer-ATC1 sample mixture to produce a polymerase-primer-ATC1 sample mixture and incubating the polymerase-primer-ATC1 mixture under conditions that promote replication of the a circles to form a primary tandem sequence DNA (TS-DNA);
- (d) adding to said polymerase-primer-ATC1 mixture at least one second-stage primer oligonucleotide (P2) comprising a first portion, or segment, having a sequence complementary to one or more sequences present in said primary TSDNA and a second portion, including a 3′-OH end, having a sequence not complementary to said primary TS-DNA, under conditions promoting hybridization of said first portion of P2 to said primary TS-DNA thereby forming a TS-DNA-P2 complex;
- (e) adding one or more second-stage amplification target circles (ATC2) to the mixture in (d) under conditions promoting hybridization of said ATC2 to said second portion of P2 to form a tandem sequence-P2-ATC2 mixture, wherein replication of the amplification target circles of (e) results in formation of secondary tandem sequence DNA.
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