# US 12,595,302 B2 · CLDN18.2 binding molecule

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- Number: US 12,595,302 B2
- Document ID: US12595302B2
- Status: Granted
- Kind: B2
- Application number: 17/613,440
- Filed: 2020-05-21
- Published: 2022-12-15
- Granted: 2026-04-07
- Earliest claimed: 2019-05-24
- Assignees: Sanyou Biopharmaceuticals Co., Ltd.
- Applicants: Sanyou Biopharmaceuticals Co., Ltd.
- Inventors: Yongcong Tan; Guojun Lang; Chao Kong; Chanjuan Liu; Min Deng; Qi Wu; Jing Zhang; Wenhai Zhang; Baoguo Fan
- Web page: https://patentgrep.com/patent/US12595302B2

## CPC

- C07K 16/28: against receptors, cell surface antigens or cell surface determinants
- A61P 35/00: Antineoplastic agents
- C07K 16/30: from tumour cells
- A61K 39/00: Medicinal preparations containing antigens or antibodies (materials for immunoassay G01N33/53)
- A61K 2039/505: {comprising antibodies}
- C07K 2317/22: from camelids, e.g. camel, llama or dromedary
- C07K 2317/24: containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
- C07K 2317/33: Crossreactivity, e.g. for species or epitope, or lack of said crossreactivity
- C07K 2317/34: Identification of a linear epitope shorter than 20 amino acid residues or of a conformational epitope defined by amino acid residues
- C07K 2317/565: Complementarity determining region [CDR]
- C07K 2317/569: Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
- C07K 2317/64: comprising a combination of variable region and constant region components
- C07K 2317/732: Antibody-dependent cellular cytotoxicity [ADCC]
- C07K 2317/734: Complement-dependent cytotoxicity [CDC]
- C07K 2317/76: Antagonist effect on antigen, e.g. neutralization or inhibition of binding
- C07K 2317/77: Internalization into the cell
- C07K 2317/92: Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
- C07K: PEPTIDES (peptides in foodstuffs A23; obtaining protein compositions for foodstuffs, working-up proteins for foodstuffs A23J; preparations for medicinal purposes A61K; peptides containing beta-lactam rings C07D; cyclic dipeptides not having in their molecule any other peptide link than those which form their ring, e.g. piperazine-2,5-diones, C07D; ergot alkaloids of the cyclic peptide type C07D519/02; macromolecular compounds having statistically distributed amino acid units in their molecules, i.e. when the preparation does not provide for a specific; but for a random sequence of the amino acid units, homopolyamides and block copolyamides derived from amino acids C08G69/00; macromolecular products derived from proteins C08H1/00; preparation of glue or gelatine C09H; single cell proteins, enzymes C12N; genetic engineering processes for obtaining peptides C12N15/00; compositions for measuring or testing processes involving enzymes C12Q; investigation or analysis of biological material G01N33/00)
- A61P: SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61K: PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES (devices or methods specially adapted for bringing pharmaceutical products into particular physical or administering forms A61J3/00; chemical aspects of, or use of materials for deodorisation of air, for disinfection or sterilisation, or for bandages, dressings, absorbent pads or surgical articles A61L; soap compositions C11D)

## Abstract

Disclosed is a novel CLDN18.2 binding molecule. Also disclosed are a nucleic acid molecule encoding the CLDN18.2 binding molecule, an expression vector and a host cell for expressing the CLDN18.2 binding molecule. Further disclosed are a method for producing the CLDN18.2 binding molecule and use thereof.

## Claims

### Claim 1

A CLDN18.2 binding molecule, which is a VHH single domain antibody or a VHH-Fc antibody, wherein the VHH comprises a CDR1, a CDR2 and a CDR3 selected from the following groups, wherein:
(a) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 30, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 32;
(b) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 1, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 2, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 3;
(c) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 1, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 2, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 6;
(d) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 1, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 4, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 5;
(e) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 30, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 37;
(f) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 33, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 62;
(g) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 33, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 37;
(h) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 34, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 37;
(i) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 35, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 62;
(j) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 36, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 62;
(k) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 38, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 62;
(l) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 39, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 41, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 37; or
(m) the CDR1 has the amino acid sequence as shown in SEQ ID NO: 40, the CDR2 has the amino acid sequence as shown in SEQ ID NO: 31, and the CDR3 has the amino acid sequence as shown in SEQ ID NO: 37.

### Claim 2 (depends on 1)

The CLDN18.2 binding molecule of claim 1, wherein the VHH comprises any one selected from the following groups:
(a) the amino acid sequence of SEQ ID NO: 7, or an amino acid sequence at least 80%, 85%, 90%, or 95% identical to SEQ ID NO: 7; and
(b) the amino acid sequence shown in SEQ ID NO: 47, or an amino acid sequence at least 80%, 85%, 90%, or 95% identical to SEQ ID NO: 47.

### Claim 3 (depends on 1)

The CLDN18.2 binding molecule of claim 1, wherein the VHH comprises or consists of any one of the following sequences: SEQ ID NOs: 7, 8, 9, 10, 11, 12, 13, 14, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51 and 63.

### Claim 4 (depends on 1)

The CLDN18.2 binding molecule of claim 1, wherein the CLDN18.2 binding molecule is a chimeric antibody comprising a VHH from camelid and an Fc domain of human IgG1 or IgG4, or a humanized antibody comprising a VHH obtained by humanizing a VHH from camelid and an Fc domain of human IgG1 or IgG4.

### Claim 5 (depends on 1)

An isolated nucleic acid molecule, comprising a nucleic acid sequence encoding the CLDN18.2 binding molecule as defined in claim 1.

### Claim 6 (depends on 5)

An expression vector, comprising the isolated nucleic acid molecule of claim 5.

### Claim 7 (depends on 6)

A host cell, comprising the expression vector of claim 6.

### Claim 8 (depends on 1)

A pharmaceutical composition, comprising the CLDN18.2 binding molecule as defined in claim 1 and a pharmaceutically acceptable carrier.

### Claim 9 (depends on 1)

A method for preparing the CLDN18.2 binding molecule as defined in claim 1, comprising the steps of:
(1) culturing a host cell comprising an expression vector(s) encoding the CLDN18.2 binding molecule; and
(2) isolating the CLDN18.2 binding molecule from the culture supernatant.

### Claim 10 (depends on 1)

A method for treating a cancer associated with CLDN18.2 in a subject, comprising: administering a therapeutically effective amount of the CLDN18.2 binding molecule as defined in claim 1 to the subject, wherein the cancer is selected from gastric cancer, pancreatic cancer and cancer of the esophagogastric junction.

### Claim 11 (depends on 10)

The method of claim 10, wherein the cancer is gastric cancer.

### Claim 12 (depends on 1)

A kit for treating or diagnosing a condition associated with CLDN18.2, comprising a container, wherein the container comprises the CLDN18.2 binding molecule as defined in claim 1.
