Quantum system configured for conditional transport with just-in-time waveform selection

A method comprising:

• generating, by a processing device of a quantum system controller of a quantum computer, a set of processed waveform files from a set of waveform files, wherein the set of waveform files are associated with one or more operations and are to be calibrated, wherein the processed waveform files are calibrated for at least a chain of electronics between one or more arbitrary waveform generators and one or more electrodes of the quantum computer, and wherein the processed waveform files are configured to cause a quantum processor of the quantum computer to perform one or more operations of a quantum circuit;
• causing, by the processing device, the processed waveform files to be preloaded to one or more arbitrary waveform generators;
• and
• causing, by the processing device and after the processed waveform files are preloaded to the one or more arbitrary waveform generators, at least one signal to be provided to the one or more arbitrary waveform generators to execute at least one of the preloaded processed waveform files, wherein the signals provided to arbitrary waveform generators to execute at least one of the preloaded waveform files is in response to the quantum system controller evaluating a conditional operation.