# US 12,111,308 B2 · Biomarker platform for Parkinson's disease using patient-derived primary dermal fibroblasts

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- Number: US 12,111,308 B2
- Document ID: US12111308B2
- Status: Granted
- Kind: B2
- Application number: 17/147,022
- Filed: 2021-01-12
- Published: 2021-05-06
- Granted: 2024-10-08
- Earliest claimed: 2017-10-16
- Assignees: Arizona Board of Regents on Behalf of the University of Arizona
- Applicants: Arizona Board of Regents On Behalf of the University of Arizona
- Inventors: Lalitha Madhavan
- Web page: https://patentgrep.com/patent/US12111308B2

## CPC

- G01N 33/5091: {for testing the pathological state of an organism}
- C12N 5/0625: {Epidermal cells, skin cells; Cells of the oral mucosa}
- G01N 33/5044: {involving specific cell types}
- G01N 2800/2835: Movement disorders, e.g. Parkinson, Huntington, Tourette
- G01N 2800/52: Predicting or monitoring the response to treatment, e.g. for selection of therapy based on assay results in personalised medicine; Prognosis
- G01N 2800/60: Complex ways of combining multiple protein biomarkers for diagnosis
- G01N 2800/7009: Oxidative stress
- G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q)
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)

## Abstract

Primary skin fibroblasts obtained from individuals diagnosed with late-onset sporadic Parkinson's disease (PD), were compared to healthy age-matched controls. Fibroblasts from PD subjects had higher growth rates, and appeared distinctly different in terms of morphology and spatial organization in culture, compared to control cells. The PD fibroblasts also exhibited significantly compromised mitochondrial structure and function when assessed via morphological and oxidative phosphorylation assays. Additionally, an increase in baseline macroautophagy levels was seen in cells from PD subjects. Exposure of the skin fibroblasts to physiologically relevant stress, specifically ultraviolet irradiation (UVA), further exaggerated the autophagic dysfunction in the PD cells. Moreover, the PD fibroblasts accumulated higher levels of reactive oxygen species (ROS) coupled with lower cell viability upon UVA treatment. These results highlight primary skin fibroblasts as a patient-relevant model that captures fundamental PD molecular mechanisms, and enable their utility as diagnostic and prognostic biomarkers for PD.

## Claims

### Claim 1

A method of screening and identifying a drug suitable for treating Parkinson's disease (PD), the method comprising:
a) obtaining a skin fibroblast sample from a subject diagnosed with PD;
b) growing said skin fibroblast samples in a medium;
c) generating a PD biomarker profile of said skin fibroblast sample comprising; determining fibroblast growth rate, cell density, cell size and shape, viability, the level of oxidative stress, the level of mitochondria, mitochondrial fragmentation, and/or the level of autophagic vesicles of said skin fibroblast sample;
d) administering the drug to the PD fibroblast sample and generating a drug-treated PD biomarker profile as in c); and
e) comparing the drug-treated PD biomarker profile to the PD biomarker profile
wherein the drug is identified as suitable for treating PD when the comparison of the PD biomarker profile against the drug-treated PD biomarker profile results in the following:
i) the drug-treated PD skin fibroblasts have a slower growth rate than the PD skin fibroblasts;
ii) the drug-treated PD skin fibroblasts have a decreased cell density than the PD skin fibroblasts;
iii) the drug-treated PD skin fibroblasts are larger and less circular than the PD skin fibroblasts;
iv) the drug-treated PD skin fibroblasts have a lower total reactive oxygen species (ROS) production and a lower mitochondrial ROS than the PD skin fibroblasts;
v) the drug-treated PD skin fibroblasts have an increase in respiratory control rate (RCR) than the PD skin fibroblasts;
vi) the drug-treated PD skin fibroblasts have a decreased proton leak than the PD skin fibroblast;
vii) the drug-treated PD skin fibroblasts have an increase in mitochondria than the PD skin fibroblast;
viii) the drug-treated PD skin fibroblasts have a decrease in mitochondrial fragmentation than the PD skin fibroblast; or
ix) the drug-treated PD skin fibroblasts have a decrease in autophagic vesicles than the PD skin fibroblasts.

### Claim 2 (depends on 1)

The method of claim 1 further comprising exposing said the PD fibroblast sample in the medium to ultraviolet (UV) radiation for a period of time prior to measuring, wherein said UV induces stress in said fibroblast sample.

### Claim 3 (depends on 2)

The method of claim 2, wherein the period of time of UV irradiation ranges from about 3 to 10 days, with about 10 to 30 minutes of exposure per day.

### Claim 4

A method of screening a subject to identify a suitable drug that treats Parkinson's disease (PD) in the subject, the method comprising:
a) obtaining a skin fibroblast sample from the subject diagnosed with PD;
b) obtaining a skin fibroblast sample from an age matched control (AMC);
c) independently growing said skin fibroblast samples from (a) and (b) in a medium;
d) generating a PD biomarker profile and AMC reference biomarker profile of said skin fibroblast sample from (a) and (b), respectively, comprising: fibroblast growth rate, cell density, cell size and shape, viability, the level of oxidative stress, the level of mitochondria, mitochondrial fragmentation, and/or the level of autophagic vesicles of said skin fibroblast samples;
e) administering a drug to the fibroblast sample from the subject and generating a biomarker profile as in step d); and
f) comparing the drug-treated PD biomarker profile to the AMC biomarker profile;
wherein the drug is identified as suitable for treating PD in the subject if the drug demonstrates that it revert the PD biomarker profile to the AMC biomarker profile after administration of the drug.

### Claim 5 (depends on 4)

The method of claim 4 further comprises exposing said PD fibroblast sample and AMC fibroblast sample in the medium to ultraviolet (UV) radiation for a period of time prior to measuring, wherein said UV induces stress in said fibroblast sample.

### Claim 6 (depends on 5)

The method of claim 5, wherein the period of time of UV irradiation ranges from about 3 to 10 days, with about 10 to 30 minutes of exposure per day.