A water intake pipeline structure passing through a soft foundation embankment below a flood level, comprising a high-pressure jet grouting pile continuous wall (4), wherein the high-pressure jet grouting pile continuous wall (4) is poured in a digging pit near a water close side on a top of the embankment, a gate valve well (2) is poured and disposed on the high-pressure jet grouting pile continuous wall (4), pipelines (1) are fixedly sleeved and connected to inner cavities at two ends of the gate valve well (2), one ends of the pipelines (1) pass through an outer wall of the gate valve well (2) and are tightly attached to the high-pressure jet grouting pile continuous wall (4), the pipelines (1) on the high-pressure jet grouting pile continuous wall (4) are poured and wrapped in a concrete pipe bed (3), backfilling clay (6) is filled on the high-pressure jet grouting pile continuous wall (4) and side walls of the gate valve well (2), a clay bound macadam (7) is laid on a top of the backfilling clay (6), one ends of the pipelines (1) far away from the high-pressure jet grouting pile continuous wall (4) extend to just above a slope toe of the water close side of the embankment, a pile frame (14) is fixedly buried and disposed in the slope toe of the embankment, bottoms of end surfaces of the pipelines (1) are fixedly welded onto the pile frame (14), and the end surfaces of the pipelines (1) are fixedly provided with water intake openings (11).