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US 12,104,157 B2Granted
Targeted inhibition using engineered oligonucleotides
AssigneemiRecule, Inc.
InventorsRobert Place, Anthony Saleh, Tishan Williams
Life of this patent
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Abstract
Disclosed herein are engineered oligonucleotides for selective inhibition of polypeptide expression and activity. Also disclosed herein are methods of selectively inhibiting polypeptide expression and activity contacting an engineered oligonucleotide with a polynucleotide encoding the polypeptide.
Claims30
An engineered oligonucleotide or salt thereof comprising a polynucleotide sequence from 15-30 nucleotides in length, wherein the engineered oligonucleotide or salt thereof:
- a) is at least partially complementary to at least a portion of at least a first and a second mRNA originating from two genetic loci that are associated with a disease or condition;
- b) is non-naturally encoded miR-30 miRNA;
- c) comprises at least 90% sequence identity to a sequence selected from SEQ ID NO:
- 38, SEQ ID NO:
- 39, SEQ ID NO:
- 40, SEQ ID NO:
- 41, SEQ ID NO:
- 42, SEQ ID NO:
- 43, SEQ ID NO:
- 44, SEQ ID NO:
- 45, SEQ ID NO:
- 624, SEQ ID NO:
- 625, SEQ ID NO:
- 626, SEQ ID NO:
- 627, SEQ ID NO:
- 629, SEQ ID NO:
- 630, SEQ ID NO:
- 632, SEQ ID NO:
- 633, SEQ ID NO:
- 635, SEQ ID NO:
- 636, SEQ ID NO:
- 637, SEQ ID NO:
- 638, SEQ ID NO:
- 639, SEQ ID NO:
- 640, SEQ ID NO:
- 641, SEQ ID NO:
- 642, and SEQ ID NO:
- 643, as determined by a BLAST pairwise sequence alignment algorithm;
- d) comprises one or more nucleotide insertions, nucleotide deletions, nucleotide substitutions, or any combination thereof, relative to one or more otherwise comparable naturally encoded, mature miR-30 miRNA;
- and,
- e) comprises about 10% lower Gibbs free energy (AG) of binding or lower, relative to a ΔG of binding of the otherwise comparable mature miR-30 miRNA binding to both the first and the second mRNA, wherein the bindings are at about 37 degrees Celsius and at a pH ranging from about 7.2 to about 7.6.
28 more elements
A nucleic acid construct comprising:
- (a) a first strand comprising an engineered oligonucleotide or salt thereof that has at least 95% sequence identity to a sequence selected from SEQ ID NO:
- 38, SEQ ID NO:
- 39, SEQ ID NO:
- 40, SEQ ID NO:
- 41, SEQ ID NO:
- 42, SEQ ID NO:
- 43, SEQ ID NO:
- 44, SEQ ID NO:
- 45, SEQ ID NO:
- 624, SEQ ID NO:
- 625, SEQ ID NO:
- 626, SEQ ID NO:
- 627, SEQ ID NO:
- 628, SEQ ID NO:
- 629, SEQ ID NO:
- 630, SEQ ID NO:
- 631, SEQ ID NO:
- 632, SEQ ID NO:
- 633, SEQ ID NO:
- 634, SEQ ID NO:
- 635, SEQ ID NO:
- 636, SEQ ID NO:
- 637, SEQ ID NO:
- 638, SEQ ID NO:
- 639, SEQ ID NO:
- 640, SEQ ID NO:
- 641, SEQ ID NO:
- 642, and SEQ ID NO:
- 643, and (b) a second strand comprising an engineered passenger oligonucleotide or salt thereof that has at least 95% sequence identity to a sequence selected from SEQ ID NO:
- 46, SEQ ID NO:
- 47, SEQ ID NO:
- 48, SEQ ID NO:
- 49, SEQ ID NO:
- 50, or SEQ ID NO:
- 51, SEQ ID NO:
- 90, SEQ ID NO:
- 91, SEQ ID NO:
- 92, SEQ ID NO:
- 93, SEQ ID NO:
- 94, SEQ ID NO:
- 95, SEQ ID NO:
- 96, SEQ ID NO:
- 97, SEQ ID NO:
- 98, SEQ ID NO:
- 99, and SEQ ID NO:
- 900 with a sequence complementary to at least a portion of the first strand, wherein the first strand and the second strand are independently from 15-30 nucleotides in length.
43 more elements
Dependencies are inferred from the claim text.