# US 12,007,395 B2 · Citrullinated brain and neurological proteins as biomarkers of brain injury or neurodegeneration > Agents: this data is available as JSON from the patentgrep API and MCP server — see https://patentgrep.com/llms.txt - Number: US 12,007,395 B2 - Document ID: US12007395B2 - Status: Granted - Kind: B2 - Application number: 16/433,106 - Filed: 2019-06-06 - Published: 2019-10-10 - Granted: 2024-06-11 - Earliest claimed: 2012-03-13 - Assignees: The Johns Hopkins University - Applicants: The Johns Hopkins University - Inventors: Jennifer E. Van Eyk; Allen Dale Everett; Zhicheng Jin - Web page: https://patentgrep.com/patent/US12007395B2 ## CPC - G01N 33/6848: {Methods of protein analysis involving mass spectrometry} - G01N 33/5306: {Improving reaction conditions, e.g. reduction of non-specific binding, promotion of specific binding} - G01N 33/6842: {Proteomic analysis of subsets of protein mixtures with reduced complexity, e.g. membrane proteins, phosphoproteins, organelle proteins} - H01J 49/0027: {Methods for using particle spectrometers} - H01J 49/0077: {specific reactions other than fragmentation} - G01N 2440/18: citrullination - G01N 2800/28: Neurological disorders - G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q) - H01J: ELECTRIC DISCHARGE TUBES OR DISCHARGE LAMPS (spark-gaps H01T; electric arc lamps H05B31/00; particle accelerators H05H) ## Abstract The present invention relates to the field of biomarkers. More specifically, the present invention relates to biomarkers useful in diagnosing brain injury or neurodegeneration. In one embodiment, a method for diagnosing brain injury in a patient comprises the steps of (a) obtaining a sample from the patient; (b) determining the ratio of citrullinated to unmodified arginine residues at one or more arginine residues of one or more brain injury biomarker proteins; and (c) correlating the ratio to a patient having brain injury or to a patient not having brain injury, thereby providing the diagnosis. ## Claims ### Claim 1 A method of treating a patient with brain injury or suspected of having brain injury, the method comprising: (a) administering over time a drug or drug treatment comprising a single dose or multiple doses of the drug to the patient; (b) detecting at least two citrullinated biomarker proteins selected from the group consisting of citrullinated neurogranin (cit-NRGN), citrullinated glial fibrillary acidic protein (cit-GFAP), and citrullinated myelin basic protein (cit-MBP) in biological samples of the patient obtained at (i) a first time point and (ii) at least one second time point following the first time point; (c) measuring levels of the at least two citrullinated biomarker proteins detected at the at least one second time point that trend toward levels of the same biomarker proteins in a brain injury control compared to the measured levels of the at least two citrullinated biomarker proteins detected at the first time point; and (d) administering or maintaining administering the drug or drug treatment to the patient subsequent to the detecting and measuring steps (b) and (c). ### Claim 2 (depends on 1) The method of claim 1, wherein the patient has or is suspected of having a neurodegenerative disease. ### Claim 3 (depends on 2) The method of claim 2, wherein the neurodegenerative disease is selected from hemorrhagic stroke, ischemic stroke, chronic traumatic encephalopathy, Alzheimer's disease, or Parkinson's Disease. ### Claim 4 (depends on 1) The method of claim 1, wherein the citrullinated NRGN is citrullinated human NRGN which is citrullinated at one or more arginine (R) amino acid residues selected from R38, R43, R51, R53, and R68 in the human NRGN polypeptide of SEQ ID NO: 1; wherein the citrullinated GFAP is citrullinated human GFAP, which is citrullinated at one or more arginine (R) amino acid residues selected from R30, R36, R88, R105, R124, R126, R136, R173, R217, R258, R270, R276, R286, R287, R367, R406, and R416 of the human GFAP polypeptide of SEQ ID NO: 3; and/or wherein the citrullinated MBP is citrullinated human MBP, which is citrullinated at one or more arginine (R) amino acid residues selected from R26, R32, R34, R44, R50, R92, R106, R124, R157, R186, R189, R196, and R197 in the human MBP polypeptide of SEQ ID NO: 163. ### Claim 5 (depends on 1) The method of claim 1, further comprising: detecting in the patient's biological sample one or both citrullinated biomarker proteins tubulin beta-4B chain and tubulin alpha-1B chain. ### Claim 6 (depends on 1) The method of claim 1, wherein the biological sample is tissue, blood, serum, plasma, cerebrospinal fluid (CSF), urine, saliva, stool and synovial fluid. ### Claim 7 (depends on 6) The method of claim 6, wherein the biological sample is blood, serum or plasma. ### Claim 8 (depends on 1) The method of claim 1, further comprising: detecting in the patient's biological sample one or both citrullinated biomarker proteins CNPase and carnosine dipeptidase 1 (CNDP1). ### Claim 9 (depends on 1) The method of claim 1, further comprising: detecting in the patient's biological sample one or both citrullinated biomarker proteins Tubulin Polymerization Promoting Protein (TPPP) and Tubulin Polymerization Promoting Protein 3 (TPPP3). ### Claim 10 (depends on 1) The method of claim 1, further comprising: detecting in the patient's biological sample one or both citrullinated biomarker proteins glutamate receptor metabotropic 3 (GRM3) and Ermin Isoform 2. ### Claim 11 (depends on 1) The method of claim 1, further comprising: detecting in the patient's biological sample one or both citrullinated biomarker proteins Metallothionein 3 (MT3) and solute carrier family 39 (zinc transporter). ### Claim 12 (depends on 1) The method of claim 1, further comprising: detecting in the patient's biological sample one or both citrullinated biomarker proteins NDRG2 Isoform 2 and neuregulin 3 (NRG3). ### Claim 13 (depends on 1) The method of claim 1, wherein the at least two citrullinated biomarker proteins are detected, or levels thereof measured, by one or more of mass spectrometry, immunoassay, electrochemical luminescent assay, electrochemical voltammetry, electrochemical amperometry, atomic force microscopy, radio frequency multipolar resonance spectroscopy, confocal microscopy, non-confocal microscopy, fluorescence optical detection, luminescence optical detection, chemiluminescence optical detection, absorbance optical detection, reflectance optical detection, transmittance optical detection, birefringence optical detection, refractive index detection, surface plasmon resonance, ellipsometry, resonant mirror detection, grating coupler waveguide detection, or interferometry. ### Claim 14 (depends on 1) The method of claim 1, wherein the first time point for measuring the levels of the two or more citrullinated biomarker proteins is prior to administering the drug or drug treatment to the patient and the at least one second time point is after administering the drug or drug treatment to the patient. ### Claim 15 (depends on 1) The method of claim 1, wherein the first time point for measuring the levels of the two or more citrullinated biomarker proteins is during the drug treatment and the at least one second time point is during the drug treatment and after the first time point. ### Claim 16 (depends on 1) The method of claim 1, wherein the levels of the two or more citrullinated biomarker proteins are measured at one or more additional time points after the second time point during the drug treatment. ### Claim 17 (depends on 1) The method of claim 1, further comprising detecting ef autoantibodies that bind to the citrullinated biomarker proteins in the patient's biological sample. ### Claim 18 A method of treating a patient with brain injury or suspected of having brain injury, the method comprising: (a) administering over time a drug or drug treatment comprising a single dose or multiple doses of the drug to the patient; (b) detecting at least two citrullinated biomarker proteins selected from the group consisting of citrullinated neurogranin (cit-NRGN), citrullinated glial fibrillary acidic protein (cit-GFAP), and citrullinated myelin basic protein (cit-MBP) in biological samples of the patient obtained at (i) a first time point and (ii) at least one second time point following the first time point; (c) measuring levels of the at least two citrullinated biomarker proteins detected at the at least one second time point that trend toward normal levels of the same biomarker proteins in a non-brain injury or healthy control compared to the measured levels of the at least two citrullinated biomarker proteins detected at the first time point; and (d) discontinuing administering the drug or drug treatment to the patient subsequent to the detecting and measuring steps (b) and (c). ### Claim 19 (depends on 18) The method of claim 18, wherein the patient has or is suspected of having a neurodegenerative disease. ### Claim 20 (depends on 19) The method of claim 19, wherein the neurodegenerative disease is selected from hemorrhagic stroke, ischemic stroke, chronic traumatic encephalopathy, Alzheimer's disease, or Parkinson's Disease. ### Claim 21 (depends on 18) The method of claim 18, wherein the citrullinated NRGN is citrullinated human NRGN which is citrullinated at one or more arginine (R) amino acid residues selected from R38, R43, R51, R53, and R68 in the human NRGN polypeptide of SEQ ID NO: 1; wherein the citrullinated GFAP is citrullinated human GFAP, which is citrullinated at one or more arginine (R) amino acid residues selected from R30, R36, R88, R105, R124, R126, R136, R173, R217, R258, R270, R276, R286, R287, R367, R406, and R416 of the human GFAP polypeptide of SEQ ID NO: 3; and/or wherein the citrullinated MBP is citrullinated human MBP, which is citrullinated at one or more arginine (R) amino acid residues selected from R26, R32, R34, R44, R50, R92, R106, R124, R157, R186, R189, R196, and R197 in the human MBP polypeptide of SEQ ID NO: 163. ### Claim 22 (depends on 18) The method of claim 18, wherein the biological sample is tissue, blood, serum, plasma, cerebrospinal fluid (CSF), urine, saliva, stool and synovial fluid. ### Claim 23 (depends on 18) The method of claim 18, wherein the at least two citrullinated biomarker proteins are detected, or levels thereof measured, by one or more of mass spectrometry, immunoassay, electrochemical luminescent assay, electrochemical voltammetry, electrochemical amperometry, atomic force microscopy, radio frequency multipolar resonance spectroscopy, confocal microscopy, non-confocal microscopy, fluorescence optical detection, luminescence optical detection, chemiluminescence optical detection, absorbance optical detection, reflectance optical detection, transmittance optical detection, birefringence optical detection, refractive index detection, surface plasmon resonance, ellipsometry, resonant mirror detection, grating coupler waveguide detection, or interferometry. ### Claim 24 (depends on 18) The method of claim 18, wherein the levels of the two or more citrullinated biomarker proteins are measured at one or more additional time points after the second time point during the drug treatment. ### Claim 25 (depends on 18) The method of claim 18, further comprising detecting of autoantibodies that bind to the citrullinated biomarker proteins in the patient's biological sample.