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US 11,959,127 B2Granted
Thermal bioswitches and related genetic circuits, vectors, cells, compositions, methods and systems
AssigneeCalifornia Institute of Technology
InventorsMikhail G. Shapiro, Dan Piraner, Mohamad H. Abedi, Brittany Moser, Audrey Lee-Gosselin
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Abstract
Temperature sensitive transcriptional bioswitches and related genetic circuits and in particular bandpass and/or multiplex genetic circuits, vectors, cells, compositions methods and systems are described.
Claims22
A method to engineer a TlpA dimer, the method comprising:
- providing a TlpA dimer having a melting temperature Tm0 and a bioswitch temperature Tbs0 with Tbs0=Tm0=0° C. to 5° C., the TlpA dimer comprising two TlpA monomers, each having SEQ ID NO:
- 461, and comprising
- a TlpA DNA binding domain of SEQ ID NO:
- 472 and
- a TlpA coiled coil temperature sensing domain having a temperature sensing amino acid sequence comprising alpha-helical heptad repeats having SEQ ID NOs:
- 473 to 484 and SEQ ID NO:
- 486, each alpha-helical heptad repeat having at least one amino acid residue at each register position a, b, c, d, e, f, and g,
- replacing in the TlpA coiled coil temperature sensing domain of at least one TlpA monomer, at least one of
- a polar amino acid in at least one of position b, position e, and position g of at least one alpha-helical heptad repeat, with a hydrophobic amino acid;
- an amino acid in at least one of position a and position d of at least one alpha-helical heptad repeat, with an amino acid configured to increase or decrease hydrophobic packing between amino acid residues in positions a and/or d of corresponding alpha-helical heptad repeats in the TlpA dimer, and
- an amino acid in at least one of position e and g of at least one alpha-helical heptad repeat with an amino acid configured to increase or decrease coulombic repulsion between corresponding amino acid residues in positions a, d, e and/or g of corresponding heptad repeats in the TlpA dimer;
- wherein the replacing obtains an engineered TlpA dimer variant having a melting temperature Tmm lower or higher than Tm0 and a bioswitch temperature Tbsm lower or higher than Tbs0.
9 more elements
Dependencies are inferred from the claim text.