# US 11,906,721 B2 · Method and device for manipulating a beam path in a microscope, method for recording image stacks in a microscope > Agents: this data is available as JSON from the patentgrep API and MCP server — see https://patentgrep.com/llms.txt - Number: US 11,906,721 B2 - Document ID: US11906721B2 - Status: Granted - Kind: B2 - Application number: 16/979,894 - Filed: 2019-03-18 - Published: 2020-12-31 - Granted: 2024-02-20 - Earliest claimed: 2018-03-16 - Assignees: Leica Microsystems CMS GmbH - Applicants: Leica Microsystems Cms GmbH - Inventors: Florian Fahrbach - Web page: https://patentgrep.com/patent/US11906721B2 ## CPC - G02B 21/006: {focusing arrangements; selection of the plane to be imaged} - G02B 21/242: {with coarse and fine adjustment mechanism} - G01N 21/41: Refractivity; Phase-affecting properties, e.g. optical path length (G01N21/21 takes precedence) - G02B 3/14: of variable focal length - G02B 21/365: {Control or image processing arrangements for digital or video microscopes (G02B21/361, G02B21/362 take precedence)} - G02B 26/0825: {the reflecting element being a flexible sheet or membrane, e.g. for varying the focus (flexible mirrors for cosmetic use A45D42/24)} - G02B 7/38: measured at different points on the optical axis {, e.g. focussing on two or more planes and comparing image data} - G02B 21/025: {with variable magnification (variable magnification G02B15/00)} - G02B 21/16: adapted for ultraviolet illumination {; Fluorescence microscopes (G02B21/0076 takes precedence)} - G02B 21/18: Arrangements with more than one light path, e.g. for comparing two specimens - G02B 21/367: {providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison} - G02B 27/0068: {having means for controlling the degree of correction, e.g. using phase modulators, movable elements (controlling the phase of light using moving or deformable elements G02B26/06)} - G02B: OPTICAL ELEMENTS, SYSTEMS OR APPARATUS - G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q) ## Abstract A method for manipulating at least one beam path in a microscope includes ascertaining a refractive index of a sample arranged in a sample volume and/or of an optical medium arranged in the sample volume. At least one microscope parameter is set in dependence on the ascertained refractive index for manipulating the beam path. ## Claims ### Claim 1 A method for manipulating at least one beam path in a microscope, the method comprising: determining a refractive index of a sample arranged in a sample volume and/or of an optical medium arranged in the sample volume; and setting at least one microscope parameter based on the determined refractive index for manipulating the beam path, wherein determining the refractive index of the sample and/or of the optical medium arranged in the sample volume comprises: (I) oblique irradiation of the sample volume with measurement light with respect to the optical axis using an optical arrangement; (II) reflecting the irradiating light at a reflective element provided in the sample volume at a first position; (III) imaging the reflected light onto a spatially resolving detector; (IV) evaluating the signal detected by the detector with respect to a size and/or offset of the reflected light on the spatially resolving detector; (V) displacing the reflective element along the optical axis to a second position and performing the method steps (III) and (IV); and (VI) determining the refractive index based on the size and/or the offset of the reflected light for the first position and the second position of the reflective element. ### Claim 2 (depends on 1) The method as claimed in claim 1, wherein the determination of the refractive index of the sample arranged in the sample volume and/or of the optical medium arranged in the sample volume comprises reading the corresponding values of the refractive index by way of a user. ### Claim 3 (depends on 1) The method as claimed in claim 1, wherein a focal position is set based on the determined refractive index with at least one of the following method steps: changing an effective focal length of at least one optical arrangement; or displacing at least one optical arrangement along its respective optical axis. ### Claim 4 (depends on 1) The method as claimed in claim 1, further comprising: displacing the sample, wherein during the displacement an interface between an immersion medium in which the sample is embedded and a medium present upstream of an illumination objective is displaced. ### Claim 5 (depends on 4) The method as claimed in claim 4, wherein a position of a focus within an image field remains at an unchanged location during the method. ### Claim 6 (depends on 4) The method as claimed in claim 4, further comprising manipulating a detection beam path with respect to the focus position in a case that the optical medium with a refractive index that differs from the sample medium and/or the immersion medium is located between the detection optical unit and the sample. ### Claim 7 (depends on 1) The method as claimed in claim 1, wherein, based on the determined refractive index, owing to the manipulation of the beam path, a spherical imaging aberration is corrected by way of changing an optical path length of a beam path based on a distance from an optical axis. ### Claim 8 (depends on 7) The method as claimed in claim 7, wherein changing the optical path length comprises displacing at least one reflecting mirror section and/or displacing an interface of a deformable transmissive medium. ### Claim 9 (depends on 7) The method as claimed in claim 7, wherein changing the optical path length is substantially implemented in accordance with a superposition of the functional relationships r2 and r4 with, respectively, a first pre-exponential factor and a second pre-exponential factor, with r corresponding to the distance from the optical axis. ### Claim 10 (depends on 1) The method as claimed in claim 1, wherein the method manipulates the at least one beam path in a wavelength-dependent manner by the method being applied to light of the at least one beam path of a first wavelength, and setting at least one further wavelength. ### Claim 11 (depends on 10) The method as claimed in claim 10, wherein setting at least one further wavelength comprises respective, sequential manipulation of the at least one beam path of light of the at least one further wavelength by application of the method to the light of the at least one beam path of the at least one further wavelength. ### Claim 12 (depends on 1) The method as claimed in claim 1, wherein the method is repeated at specified temporal intervals. ### Claim 13 (depends on 1) The method as claimed in claim 1, further comprising reading of calibration data, wherein the at least one microscope parameter is set based on the determined refractive index and based on the calibration data. ### Claim 14 (depends on 1) A non-volatile computer-readable storage medium comprising a program for carrying out the method as claimed in claim 1. ### Claim 15 A method for recording image stacks in a microscope, the method comprising: manipulating at least one beam path by: determining a refractive index of a sample arranged in a sample volume and/or of an optical medium arranged in the sample volume, and setting at least one microscope parameter based on the determined refractive index for manipulating the beam path; and capturing a change in a position of the sample with respect to an optical arrangement and/or capturing changes in an excitation wavelength before the at least one microscope parameter is set, wherein determining the refractive index of the sample and/or of the optical medium arranged in the sample volume comprises: (I) oblique irradiation of the sample volume with measurement light with respect to the optical axis using the optical arrangement; (II) reflecting the irradiating light at a reflective element provided in the sample volume at a first position; (III) imaging the reflected light onto a spatially resolving detector; (IV) evaluating the signal detected by the detector with respect to a size and/or offset of the reflected light on the spatially resolving detector; (V) displacing the reflective element along the optical axis to a second position and performing the method steps (III) and (IV); and (VI) determining the refractive index based on the size and/or the offset of the reflected light for the first position and the second position of the reflective element. ### Claim 16 (depends on 15) The method as claimed in claim 15, further comprising recording and/or storing an image for generating the image stack. ### Claim 17 (depends on 15) The method as claimed in claim 15, further comprising capturing a trigger signal for starting performance of further method steps. ### Claim 18 An apparatus for manipulating at least one beam path in a microscope, the apparatus comprising: a refractive-index determination module for determining the refractive index of a sample and/or the refractive index of an optical medium arranged in a sample volume; and at least one beam path manipulator for setting at least one microscope parameter based on the determined refractive index for manipulation of the at least one beam path, wherein determining the refractive index of the sample and/or of the optical medium arranged in the sample volume comprises: (I) oblique irradiation of the sample volume with measurement light with respect to the optical axis using an optical arrangement; (II) reflecting the irradiating light at a reflective element provided in the sample volume at a first position; (III) imaging the reflected light onto a spatially resolving detector; (IV) evaluating the signal detected by the detector with respect to a size and/or offset of the reflected light on the spatially resolving detector; (V) displacing the reflective element along the optical axis to a second position and performing the method steps (III) and (IV); and (VI) determining the refractive index based on the size and/or the offset of the reflected light for the first position and the second position of the reflective element. ### Claim 19 (depends on 18) The apparatus as claimed in claim 18, wherein the beam path manipulator comprises at least one element from the following group: an optical element having an electrically settable focal length; an actuator module a correction ring; a correction plate module for introducing correction plates into the beam path; an optical arrangement equipped with a correction ring; a deformable mirror; or a hollow element, filled with a transparent liquid medium, with at least one transparent entrance and/or exit face, wherein the at least one transparent entrance and/or exit face is deformable. ### Claim 20 (depends on 18) The apparatus as claimed in claim 18, further comprising a timer module which outputs at specified temporal intervals a starting signal for starting the measurement of the refractive index and/or for manipulation of the at least one beam path. ### Claim 21 A method for recording image stacks in a microscope, the method comprising: displacing a focal plane of a first optical arrangement by a preset scanning distance; manipulating at least one beam path of the first optical arrangement for correcting imaging aberrations of the first optical arrangement by: determining a refractive index of a sample arranged in a sample volume and/or of an optical medium arranged in the sample volume, and setting at least one microscope parameter based on the determined refractive index for manipulating the beam path; and displacing or adjusting the focal plane of a second optical arrangement by an adjustment distance that is based on the determined refractive index, wherein determining the refractive index of the sample and/or of the optical medium arranged in the sample volume comprises: (I) oblique irradiation of the sample volume with measurement light with respect to the optical axis using the first optical arrangement; (II) reflecting the irradiating light at a reflective element provided in the sample volume at a first position; (III) imaging the reflected light onto a spatially resolving detector; (IV) evaluating the signal detected by the detector with respect to a size and/or offset of the reflected light on the spatially resolving detector; (V) displacing the reflective element along the optical axis to a second position and performing the method steps (III) and (IV); and (VI) determining the refractive index based on the size and/or the offset of the reflected light for the first position and the second position of the reflective element. ### Claim 22 (depends on 21) The method as claimed in claim 21, wherein the displacing or adjusting the focal plane of the second optical arrangement comprises manipulating the at least one beam path of the second optical arrangement for correcting imaging aberrations of the second optical arrangement by: determining a refractive index of a sample arranged in a sample volume and/or of an optical medium arranged in the sample volume, and setting at least one microscope parameter based on the determined refractive index for manipulating the beam path. ### Claim 23 (depends on 21) The method as claimed in claim 21, wherein the method steps is repeated n times, wherein manipulating the at least one beam path of the first optical arrangement in the repetitions of the method includes only setting at least one microscope parameter based on the determined refractive index for manipulating the beam path. ### Claim 24 A method for manipulating at least one beam path in a microscope, the method comprising: determining a refractive index of a sample arranged in a sample volume and/or of an optical medium arranged in the sample volume; and setting at least one microscope parameter based on the determined refractive index for manipulating the beam path, wherein determining of the refractive index of the sample and/or of the optical medium arranged in the sample volume comprises the following method steps: (i) focusing measurement light into the sample volume by an optical arrangement, wherein the measurement light is transmitted on a sample side of the optical arrangement by the optical medium and a further optical medium; (ii) detecting the measurement light that is reflected by a reflective element and transmitted by a further optical arrangement or by the optical arrangement, using a detector arrangement or using a spatially resolving detector; (iii) determining a working distance between the optical arrangement and the reflective element based on the measurement light detected by the detector, wherein, for the working distance, the focus of the measurement light lies on the reflective element; (iv) varying at least one of the following parameters: (iv.1) distance between the optical arrangement and the sample medium; (iv.2) distance between the reflector and the further optical medium; (iv.3) divergence of the measurement light, wherein the varying results in a fixed distance change of a focus position of the measurement light; (v) determining a further working distance according to method steps (i) to (iii); (vi) determining a working distance change between the working distance and the further working distance; and (vii) determining the refractive index based on the distance change and the working distance change.