Probe for selectively characterizing enzymes involved in xenobiotic metabolism and method of making and using the same
AssigneeBattelle Memorial Institute
InventorsAaron T. Wright, Susan Ramos-Hunter, Christopher Whidbey
Life of this patent
Estimating the term…
Abstract
Activity-based probes that can be used to selectively identify and characterize enzymes that are involved in different phases of xenobiotic metabolism in a host and its microbiota population(s) are described. The activity-based probes described specifically label only their target active enzymes involved in xenobiotic metabolism and therefore provide a measurement of true protein functional activity rather than transcript or protein abundance. The activity-based probes also provide multimodal profiling of these active enzymes. Methods for preparing the activity based probes and exemplary methods for their use also are disclosed.
Claims21
A method, comprising:
- exposing a subject or a sample to a probe for a time sufficient to allow the probe to bind to an enzyme involved in xenobiotic metabolism such that a probe-enzyme conjugate is formed;
- and
- analyzing the probe-enzyme conjugate using a fluorescent detection technique, a colorimetric detection technique, a mass spectrometry technique, or a combination thereof;
- wherein the probe comprises a compound of Formula II
- wherein
- ERG, if present, is
- S(O)2OH, or an anionic form thereof;
- P(O)(OH)2, or an anionic form thereof;
- a halogen;
- or —OPh-CH2—ONO2;
- EBG has a structure satisfying a formula selected from Formulas IIAEBG-IIJEBG
- wherein
- Y is CH3 or CF3;
- Y′ is O, NO2, or —N═NR″, wherein R″ is a dye or other reporting moiety;
- t is an integer selected from 0 to 5;
- and
- R′ is selected from aldehyde, ketone, ester, carboxylic acid, acyl, acyl halide, cyano, sulfonate, nitro, nitroso, quaternary amine, CF3, alkyl halide, or combinations thereof;
- Linkera comprises an aliphatic group, a heteroaliphatic group, an aromatic group, an aliphatic-aromatic group, a heteroaliphatic-aromatic group, a heteroaromatic group, an aliphatic-heteroaromatic group, or a heteroaliphatic-heteroaromatic group;
- each of Linkerb and Linkerc, if present, independently comprises an aliphatic group, a heteroaliphatic group, an aromatic group, an aliphatic-aromatic group, a heteroaliphatic-aromatic group, a heteroaromatic group, an aliphatic-heteroaromatic group, or a heteroaliphatic-heteroaromatic group;
- R, if present, is a group comprising a carbamate or a carbonate;
- each Tag, if present, independently comprises a functional group or molecule capable of generating a detectable signal;
- each pTag, which is present if a Tag is not present, independently comprises a clickable functional group;
- and
- each of n, m, p, and q independently is 0 or 1.
Dependencies are inferred from the claim text.