Apparatus and method for processing mass spectrum
AssigneeJEOL Ltd.
InventorsAyumi Kubo, Masaaki Ubukata
Life of this patent
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Abstract
An evaluation section identifies, in a list of candidate compounds, a group of candidate compounds having the degree of reverse similarity greater than or equal to a threshold s1. When all candidates in the group of candidate compounds have differences between the degrees of similarity that are greater than or equal to a threshold s2, the evaluation section judges that there is a composite state. The difference between the degrees of similarity is computed by subtracting the degree of forward similarity from the degree of reverse similarity. The similarity ratio may be used in place of the difference between the degrees of similarity.
Claims9
A mass spectrum processing apparatus comprising:
- a first calculator configured to calculate a first degree of similarity between a first representative value array that represents a target mass spectrum obtained by mass spectrometry of a sample and a first corresponding value array that is selected from a standard mass spectrum in a library according to a corresponding relationship with the first representative value array;
- a second calculator configured to calculate a second degree of similarity between a second representative value array that represents the standard mass spectrum and a second corresponding value array that is selected from the target mass spectrum according to a corresponding relationship with the second representative value array;
- an evaluator configured to judge, based on the first degree of similarity and the second degree of similarity, that the target mass spectrum is in a composite state in which the target mass spectrum is derived from a plurality of compounds, wherein the first degree of similarity is a degree of forward similarity that has a characteristic of being lower as a likelihood that the target mass spectrum is a composite mass spectrum derived from a plurality of compounds is higher, and wherein the second degree of similarity is a degree of reverse similarity that has a characteristic of being higher as a likelihood that the target mass spectrum includes the standard mass spectrum is higher;
- and
- a search unit configured to perform a library search based on the target mass spectrum and generate a list of candidate compounds,
- wherein the evaluator is configured to identify a group of candidate compounds from the list of candidate compounds by narrowing the list of candidate compounds based only on a plurality of second degrees of similarity corresponding to a plurality of candidate compounds constituting the list of candidate compounds,
- wherein the evaluator comprises a third calculator configured to calculate, for each candidate compound in the group of candidate compounds, a difference between the first degree of similarity and the second degree of similarity as a difference between the degrees of similarity, and
- wherein the evaluator comprises a judgement unit configured to judge that the target mass spectrum is in the composite state based on a plurality of differences between the degrees of similarity corresponding to a plurality of candidate compounds constituting the group of candidate compounds.
A mass spectrum processing method comprising the steps of:
- computing a first degree of similarity between a first representative value array that represents a target mass spectrum obtained by mass spectrometry of a sample and a first corresponding value array that is selected from a standard mass spectrum in a library according to a corresponding relationship with the first representative value array;
- computing a second degree of similarity between a second representative value array that represents the standard mass spectrum and a second corresponding value array that is selected from the target mass spectrum according to a corresponding relationship with the second representative value array;
- judging that the target mass spectrum is a composite mass spectrum derived from a plurality of compounds, or providing information indicating the possibility that the target mass spectrum is the composite mass spectrum, based on the first degree of similarity and the second degree of similarity, wherein the first degree of similarity is a degree of forward similarity that has a characteristic of being lower as a likelihood that the target mass spectrum is a composite mass spectrum derived from a plurality of compounds is higher, and wherein the second degree of similarity is a degree of reverse similarity that has a characteristic of being higher as a likelihood that the target mass spectrum includes the standard mass spectrum is higher;
- performing a library search based on the target mass spectrum and generate a list of candidate compounds;
- identifying a group of candidate compounds from the list of candidate compounds by narrowing the list of candidate compounds based only on a plurality of second degrees of similarity corresponding to a plurality of candidate compounds constituting the list of candidate compounds,
- calculating, for each candidate compound in the group of candidate compounds, a difference between the first degree of similarity and the second degree of similarity as a difference between the degrees of similarity, and
- judging that the target mass spectrum is in the composite state based on a plurality of differences between the degrees of similarity corresponding to a plurality of candidate compounds constituting the group of candidate compounds.
A non-transitory storage medium storing a program to be executed in an information processing device, the program comprising:
- a function of computing a first degree of similarity between a first representative value array that represents a target mass spectrum obtained by mass spectrometry of a sample and a first corresponding value array that is selected from a standard mass spectrum in a library according to a corresponding relationship with the first representative value array;
- a function of computing a second degree of similarity between a second representative value array that represents the standard mass spectrum and a second corresponding value array that is selected from the target mass spectrum according to a corresponding relationship with the second representative value array;
- and
- a function of judging that the target mass spectrum is a composite mass spectrum derived from a plurality of compounds, or providing information indicating the possibility that the target mass spectrum is the composite mass spectrum, based on the first degree of similarity and the second degree of similarity, wherein the first degree of similarity is a degree of forward similarity that has a characteristic of being lower as a likelihood that the target mass spectrum is a composite mass spectrum derived from a plurality of compounds is higher, and wherein the second degree of similarity is a degree of reverse similarity that has a characteristic of being higher as a likelihood that the target mass spectrum includes the standard mass spectrum is higher;
- a function of performing a library search based on the target mass spectrum and generate a list of candidate compounds;
- a function of identifying a group of candidate compounds from the list of candidate compounds by narrowing the list of candidate compounds based only on a plurality of second degrees of similarity corresponding to a plurality of candidate compounds constituting the list of candidate compounds,
- a function of calculating, for each candidate compound in the group of candidate compounds, a difference between the first degree of similarity and the second degree of similarity as a difference between the degrees of similarity, and
- a function of judging that the target mass spectrum is in the composite state based on a plurality of differences between the degrees of similarity corresponding to a plurality of candidate compounds constituting the group of candidate compounds.
Dependencies are inferred from the claim text.