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US 11,697,837 B2Granted
Efficient sequencing of dsDNA with extremely low level of errors
AssigneeBoard of Regents, The University of Texas System
InventorsZbyszek Otwinowski, Dominika Borek
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Abstract
DNA is sequenced by: (a) combining dsDNA fragments with Y-adapters and hairpin adapters comprising an affinity-label under conditions wherein the adapters ligate to fragments forming a mixture of fragment inserts flanked by two Y-adapters, a Y-adapter and a hairpin adapter, and two hairpin adapters; and (b) sequencing the selected fragment inserts with sequencing primers selecting for the Y-adapters.
Claims20
A method for sequencing DNA comprising:
- a) combining double-stranded DNA (dsDNA) fragments with:
- (i) Y-adapters each comprising a stem and (ii) hairpin adapters comprising an affinity-label, under conditions wherein at least some of the Y-adapters and at least some of the hairpin adapters ligate to at least some of the fragments forming a mixture of fragment-adapter complexes comprising:
- fragment inserts flanked by two Y-adapters (“YY complexes”),
- fragment inserts flanked by a Y-adapter on one end and a hairpin adapter on the other end (“hairpin complexes”), and
- fragment inserts flanked by two hairpin adapters (“dumbbell complexes”);
- and
- b) sequencing the fragment inserts of the hairpin complexes with sequencing primers selecting for the Y-adapters,
- wherein the Y-adapters comprise bases promoting mispairing at the stem of the Y-adapter sufficient to weaken zipper closing at the stem and promote annealing access by a sequencing primer.
5 more elements
Dependencies are inferred from the claim text.