Extended dicer substrate agents and methods for the specific inhibition of gene expression
AssigneeDicerna Pharmaceuticals, Inc.
InventorBob Dale Brown
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Abstract
The invention provides compositions and methods for reducing expression of a target gene in a cell, involving contacting a cell with an isolated double stranded nucleic acid (dsNA) in an amount effective to reduce expression of a target gene in a cell. The dsNAs of the invention possess a single stranded extension (in most embodiments, the single stranded extension comprises at least one modified nucleotide and/or phosphate back bone modification). Such single stranded extended Dicer-substrate siRNAs (DsiRNAs) were demonstrated to be effective RNA inhibitory agents compared to corresponding double stranded DsiRNAs.
Claims32
An isolated double stranded nucleic acid comprising:
- a first oligonucleotide strand having a 5′ terminus and a 3′ terminus and a second oligonucleotide strand having a 5′ terminus and a 3′ terminus, wherein each said 5′ terminus comprises a 5′ terminal nucleotide and each said 3′ terminus comprises a 3′ terminal nucleotide;
- and
- an extended loop at the 3′ terminus of said first strand or the 5′ terminus of said second strand;
- wherein said first strand is 35-60 nucleotide residues in length;
- wherein said second strand is 19-39 nucleotide residues in length;
- wherein from 1-30 consecutive nucleotides, including the 5′ terminal nucleotide, of said first strand are unpaired with the 3′ terminus of said second strand, thereby forming a 1-30 nucleotide single stranded 5′ overhang on said first strand;
- wherein said first strand is annealed to said second strand to form a duplex region of 18-30 base pairs;
- and
- wherein said second strand is sufficiently complementary to a target RNA along at least 19 ribonucleotides of said second strand length to reduce target gene expression when said double stranded nucleic acid is introduced into a mammalian cell.
Dependencies are inferred from the claim text.