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US 11,618,826 B2Granted
Carborhodamine compounds and methods of preparation thereof
AssigneeElitechgroup Mdx LLC
InventorEugeny A. Lukhtanov
Life of this patent
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Abstract
The carborhodamine dyes disclosed herein are novel reagents suitable for automated incorporation of carborhodamine dyes into oligonucleotides that can be used in detection methods for nucleic acid targets. This disclosure provides an efficient and simple process for the preparation of carborhodamine compounds and introduces previously unknown reagents for the automated synthesis of oligonucleotide-carborhodamine conjugates.
Claims10
A method for preparing carborhodamine compounds having a structure of
- comprising reacting a compound having a structure of
- with a compound having a structure of
- in a reaction mixture comprising a solvent and a Lewis acid,
- wherein:
- R1 and R2 are independently (C1-C20)alkyl or (C1-C20)heteroalkyl, or together R1 and R2 form a ring structure comprising one or more rings,
- R3, R6, R7, and R10 are independently selected from H, (C1-C20)alkyl, (C1-C20)alkoxy, (C1-C20)alkenyl, (C1-C20)alkynyl, aryl, heteroaryl, a linking group, halo, —OR′, —OC(O)R′, —NR′R″, —SR′, —OC(O) NR′R″, —NR″C(O)R′, —NR″C(O)OR′, —NR′C(O)NR″R′″, and —SO2H, wherein R′, R″ and R′″ are independently selected from H, (C1-C8)alkyl, (C1-C8)heteroalkyl, aryl, heteroaryl and a linking group, and wherein (C1-C20)alkyl, aryl, and heteroaryl groups are unsubstituted or substituted,
- R4, R5, R8 and R9 are independently selected from H, (C1-C20)alkyl, (C1-C20)alkoxy, (C1-C20)alkenyl, (C1-C20)alkynyl, aryl, heteroaryl, and a linking group, wherein (C1-C20)alkyl, aryl, and heteroaryl groups are unsubstituted or substituted,
- or
- R3, R4, R5, R6, R7, R8, R9, and R10 form one or more 4- to 7-member ring systems by bridging between one or more of R3, R4, R5, R6, R7, R8, R9, and R10,
- R11, R12, R13 and R14 are independently selected from H, (C1-C20)alkyl, (C1-C20)alkoxy, (C1-C20)alkenyl, (C1-C20)alkynyl, aryl, heteroaryl, a linking group, halo, —ORiv, —OSO2Riv, —OC(O) Riv, —NRivRv, —SRiv, —Riv, —CN, —NO2, —CO2Riv, —CONRivRv, —C(O) Riv, —SO2Riv, —SO2NRivRv, —N3, —CH(Ph)2, perfluoro(C1-C4)alkoxy, and perfluoro(C1-C4)alkyl, wherein Ph is phenyl, wherein Riv and Rv are independently selected from H, (C1-C20)alkyl perfluoro(C1-C4)alkyl, perfluoro(C1-C4)heteroalkyl, aryl and heteroaryl, and wherein aryl and heteroaryl groups are unsubstituted or substituted,
- or
- R11, R12, R13 and R14 form one or more 4- to 7-member ring systems by bridging between one or more of R11, R12, R13 and R14, and
- the linking group is selected from (C1-C20)alkyl, aryl, (C1-C20)heteroalkyl, heteroaryl and combinations thereof, wherein at least one hydrocarbon hydrogen of the linking group is replaced with a protected or unprotected carboxyl or a hydroxyl group.
10 more elements
Dependencies are inferred from the claim text.